Gene annotation
Transcriptome id Sobic.001G544300.1
Synonym Sb01g050660
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA methyltransferase, TrmH family protein, putative, expressed
UniProt C5WNP1
Pfam PF00588
Panther DB PTHR12029 PTHR12029:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G17610 : tRNA/rRNA methyltransferase (SpoU) family protein
RAP-DB (Rice) LOC_Os03g01110.1 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000068 , Zm00025a058001 , Zm00025a000036
Brachypodium KQK24179 , KQK24184 , KQK24185 , KQK24182 , KQK24183 , KQK24180 , KQK24181
Barley HORVU4Hr1G090170.17 , HORVU4Hr1G090170.16 , HORVU4Hr1G090170.15 , HORVU4Hr1G090170.14 , HORVU4Hr1G090170.13 , HORVU4Hr1G090170.12 , HORVU4Hr1G090170.11 , HORVU4Hr1G090170.10 , HORVU4Hr1G090170.19 , HORVU4Hr1G090170.18 , HORVU4Hr1G090170.39 , HORVU4Hr1G090170.38 , HORVU4Hr1G090170.31 , HORVU4Hr1G090170.30 , HORVU4Hr1G090170.33 , HORVU4Hr1G090170.32 , HORVU4Hr1G090170.35 , HORVU4Hr1G090170.34 , HORVU4Hr1G090170.37 , HORVU4Hr1G090170.36 , HORVU4Hr1G090170.28 , HORVU4Hr1G090170.29 , HORVU4Hr1G090170.26 , HORVU4Hr1G090170.27 , HORVU4Hr1G090170.24 , HORVU4Hr1G090170.25 , HORVU4Hr1G090170.22 , HORVU4Hr1G090170.23 , HORVU4Hr1G090170.20 , HORVU4Hr1G090170.21 , HORVU4Hr1G090170.9 , HORVU4Hr1G090170.8 , HORVU4Hr1G090170.7 , HORVU4Hr1G090170.6 , HORVU4Hr1G090170.5 , HORVU4Hr1G090170.4 , HORVU4Hr1G090170.3 , HORVU4Hr1G090170.2 , HORVU4Hr1G090170.1 , HORVU4Hr1G090170.59 , HORVU4Hr1G090170.58 , HORVU4Hr1G090170.53 , HORVU4Hr1G090170.52 , HORVU4Hr1G090170.51 , HORVU4Hr1G090170.50 , HORVU4Hr1G090170.57 , HORVU4Hr1G090170.56 , HORVU4Hr1G090170.55 , HORVU4Hr1G090170.54 , HORVU4Hr1G090170.48 , HORVU4Hr1G090170.40 , HORVU4Hr1G090170.41 , HORVU4Hr1G090170.42 , HORVU4Hr1G090170.43 , HORVU4Hr1G090170.44 , HORVU4Hr1G090170.45 , HORVU4Hr1G090170.46 , HORVU4Hr1G090170.47 , HORVU4Hr1G090170.75 , HORVU4Hr1G090170.74 , HORVU4Hr1G090170.76 , HORVU4Hr1G090170.71 , HORVU4Hr1G090170.70 , HORVU4Hr1G090170.73 , HORVU4Hr1G090170.72 , HORVU4Hr1G090170.62 , HORVU4Hr1G090170.63 , HORVU4Hr1G090170.60 , HORVU4Hr1G090170.61 , HORVU4Hr1G090170.66 , HORVU4Hr1G090170.67 , HORVU4Hr1G090170.64 , HORVU4Hr1G090170.65 , HORVU4Hr1G090170.68 , HORVU4Hr1G090170.69
Wheat TraesCS4B02G378500 , TraesCS4B02G378500 , TraesCSU02G128900 , TraesCSU02G128900 , TraesCS5A02G545100
Populus -


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cDNA sequences
Sobic.001G544300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G049800 DDT domain containing protein, putative, expressed -
2 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
3 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
4 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
5 Sobic.010G224700 - K17680: twinkle protein
6 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
9 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
11 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
12 Sobic.006G059500 expressed protein K13150: COIL, coilin
13 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
14 Sobic.009G173600 expressed protein K14572: MDN1, midasin
15 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
16 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
17 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
18 Sobic.004G027300 expressed protein -
19 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
20 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G544300 Sobic001G544300 Sobic001G049800 Sobic001G049800 Sobic001G544300--Sobic001G049800 Sobic002G378100 Sobic002G378100 Sobic001G544300--Sobic002G378100 Sobic004G151000 Sobic004G151000 Sobic001G544300--Sobic004G151000 Sobic003G123200 Sobic003G123200 Sobic001G544300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic001G544300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic001G544300--Sobic007G060600 Sobic008G049100 Sobic008G049100 Sobic001G544300--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic001G544300--Sobic003G199300 Sobic010G083900 Sobic010G083900 Sobic001G544300--Sobic010G083900 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic001G049800--Sobic004G027300 Sobic001G049800--Sobic001G544300 Sobic001G049800--Sobic010G224700 Sobic006G111200 Sobic006G111200 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic001G049800--Sobic010G083900 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic001G453500 Sobic001G453500 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic010G224700--Sobic003G199300 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic004G085000 Sobic004G085000 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic003G199300--Sobic010G224700 Sobic003G199300--Sobic006G185200 Sobic010G083900--Sobic002G378100 Sobic001G322600 Sobic001G322600 Sobic010G083900--Sobic001G322600 Sobic010G083900--Sobic001G049800 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic010G083900--Sobic004G151000 Sobic003G014700 Sobic003G014700 Sobic010G083900--Sobic003G014700 Sobic005G028300 Sobic005G028300 Sobic010G083900--Sobic005G028300 Sobic010G083900--Sobic001G119600
Octagon: transcription factors


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