Gene annotation
Transcriptome id Sobic.001G119600.1
Synonym Sb01g010560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger family protein, putative, expressed
UniProt C5WNQ2
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF40
NCBI CDD KOG4198; RNA-binding Ran Zn-finger protein and related proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G70650 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os03g50120.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017008
Brachypodium KQK13596
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
2 Sobic.010G224700 - K17680: twinkle protein
3 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
5 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
6 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
9 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
10 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
11 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
12 Sobic.007G201700 mTERF domain containing protein, expressed -
13 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
14 Sobic.004G027300 expressed protein -
15 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
16 Sobic.002G423400 PPR repeat containing protein, expressed -
17 Sobic.006G128400 PPR repeat containing protein, expressed -
18 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
20 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase


Gene co-expression network
sample Sobic001G119600 Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic001G119600--Sobic003G425100 Sobic002G378100 Sobic002G378100 Sobic001G119600--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic004G173100 Sobic004G173100 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic006G231800--Sobic002G378100 Sobic006G231800--Sobic006G185200 Sobic006G231800--Sobic009G213200 Sobic006G049600 Sobic006G049600 Sobic006G231800--Sobic006G049600 Sobic006G231800--Sobic001G119600 Sobic010G003400 Sobic010G003400 Sobic006G231800--Sobic010G003400 Sobic002G373950 Sobic002G373950 Sobic006G231800--Sobic002G373950
Octagon: transcription factors


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