Gene annotation
Transcriptome id Sobic.006G231800.2,Sobic.006G231800.1
Synonym Sb06g029960, MRE11, ATMRE11
Functional annotation double-strand break repair protein MRE11, putative, expressed
UniProt C5YGR2
Pfam PF00149 PF04152
Panther DB PTHR10139 PTHR10139:SF1
NCBI CDD -
KEGG Orthology K10865; double-strand break repair protein MRE11
Gene Ontology GO:0016787; hydrolase activity GO:0006302double-strand break repair GO:0005634nucleus GO:0004519endonuclease activity GO:0006259DNA metabolic process GO:0004527exonuclease activity


Orthologs (automatic annotation)
TAIR AT5G54260 : DNA repair and meiosis protein (Mre11)
RAP-DB (Rice) LOC_Os04g54340.1 : double-strand break repair protein MRE11, putative, expressed
MaizeGDB (Corn) Zm00025a009627
Brachypodium PNT61939 , KQJ84842 , KQJ84843 , KQJ84840 , KQJ84841 , PNT61940
Barley HORVU2Hr1G116540.19 , HORVU2Hr1G116540.18 , HORVU2Hr1G116540.35 , HORVU2Hr1G116540.34 , HORVU2Hr1G116540.33 , HORVU2Hr1G116540.32 , HORVU2Hr1G116540.31 , HORVU2Hr1G116540.30 , HORVU2Hr1G116540.11 , HORVU2Hr1G116540.10 , HORVU2Hr1G116540.13 , HORVU2Hr1G116540.12 , HORVU2Hr1G116540.15 , HORVU2Hr1G116540.14 , HORVU2Hr1G116540.17 , HORVU2Hr1G116540.16 , HORVU2Hr1G116540.9 , HORVU2Hr1G116540.8 , HORVU2Hr1G116540.5 , HORVU2Hr1G116540.4 , HORVU2Hr1G116540.7 , HORVU2Hr1G116540.6 , HORVU2Hr1G116540.1 , HORVU2Hr1G116540.3 , HORVU2Hr1G116540.2 , HORVU2Hr1G116540.24 , HORVU2Hr1G116540.25 , HORVU2Hr1G116540.26 , HORVU2Hr1G116540.27 , HORVU2Hr1G116540.20 , HORVU2Hr1G116540.21 , HORVU2Hr1G116540.22 , HORVU2Hr1G116540.23 , HORVU2Hr1G116540.28 , HORVU2Hr1G116540.29
Wheat TraesCS2B02G559100 , TraesCS2D02G531600 , TraesCS2D02G531600 , TraesCS2D02G531600 , TraesCS2B02G559100 , TraesCS2B02G559100 , TraesCS2B02G559100 , TraesCS2B02G559100 , TraesCS2A02G528700 , TraesCS2A02G528700 , TraesCS2A02G528700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
2 Sobic.009G145101 - -
3 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
4 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
5 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G049600 methyltransferase domain containing protein, expressed -
7 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
8 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
9 Sobic.002G373950 - -
10 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
11 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
12 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
13 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
14 Sobic.010G224700 - K17680: twinkle protein
15 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
16 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
17 Sobic.008G132000 RGH1A, putative, expressed -
18 Sobic.002G309200 FAR1 family protein, expressed -
19 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
20 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3


Gene co-expression network
sample Sobic006G231800 Sobic006G231800 Sobic001G422500 Sobic001G422500 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic002G378100 Sobic002G378100 Sobic006G231800--Sobic002G378100 Sobic006G185200 Sobic006G185200 Sobic006G231800--Sobic006G185200 Sobic009G213200 Sobic009G213200 Sobic006G231800--Sobic009G213200 Sobic006G049600 Sobic006G049600 Sobic006G231800--Sobic006G049600 Sobic001G119600 Sobic001G119600 Sobic006G231800--Sobic001G119600 Sobic010G003400 Sobic010G003400 Sobic006G231800--Sobic010G003400 Sobic002G373950 Sobic002G373950 Sobic006G231800--Sobic002G373950 Sobic004G036700 Sobic004G036700 Sobic001G422500--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic001G422500--Sobic006G231800 Sobic010G083900 Sobic010G083900 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic006G198600 Sobic006G198600 Sobic001G422500--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic001G422500--Sobic003G123200 Sobic001G081000 Sobic001G081000 Sobic009G145101--Sobic001G081000 Sobic009G145101--Sobic006G231800 Sobic005G059200 Sobic005G059200 Sobic009G145101--Sobic005G059200 Sobic003G189333 Sobic003G189333 Sobic009G145101--Sobic003G189333 Sobic002G105101 Sobic002G105101 Sobic009G145101--Sobic002G105101 Sobic006G226300 Sobic006G226300 Sobic009G145101--Sobic006G226300 Sobic003G221600 Sobic003G221600 Sobic009G145101--Sobic003G221600 Sobic007G217100 Sobic007G217100 Sobic009G145101--Sobic007G217100 Sobic009G251200 Sobic009G251200 Sobic009G145101--Sobic009G251200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic002G378100--Sobic009G213200 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic009G213200--Sobic006G185200 Sobic009G213200--Sobic002G378100 Sobic007G097400 Sobic007G097400 Sobic009G213200--Sobic007G097400 Sobic009G213200--Sobic001G214600 Sobic009G213200--Sobic002G373950 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic009G213200--Sobic006G231800 Sobic009G213200--Sobic009G251200 Sobic006G049600--Sobic009G101200 Sobic006G049600--Sobic010G003400 Sobic008G009600 Sobic008G009600 Sobic006G049600--Sobic008G009600 Sobic003G375200 Sobic003G375200 Sobic006G049600--Sobic003G375200 Sobic010G053600 Sobic010G053600 Sobic006G049600--Sobic010G053600 Sobic007G071900 Sobic007G071900 Sobic006G049600--Sobic007G071900 Sobic006G049600--Sobic006G231800 Sobic006G086600 Sobic006G086600 Sobic006G049600--Sobic006G086600 Sobic008G051200 Sobic008G051200 Sobic006G049600--Sobic008G051200 Sobic001G119600--Sobic002G262100 Sobic001G119600--Sobic010G224700 Sobic001G119600--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic001G119600--Sobic006G231800 Sobic010G003400--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic002G373950--Sobic006G086600 Sobic002G373950--Sobic010G003400 Sobic002G373950--Sobic001G453400 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic002G373950--Sobic003G260400 Sobic010G115400 Sobic010G115400 Sobic002G373950--Sobic010G115400 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600
Octagon: transcription factors


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