Gene annotation
Transcriptome id Sobic.007G217100.3,Sobic.007G217100.1,Sobic.007G217100.2
Synonym EMB2777, Sb07g028350
Functional annotation sas10/Utp3 family protein, expressed
UniProt A0A1B6PJ12 , A0A1B6PJ51 , A0A1Z5RB46
Pfam PF04000 PF09368
Panther DB PTHR13237 PTHR13237:SF8
NCBI CDD KOG3118; Disrupter of silencing SAS10
KEGG Orthology K14767; UTP3, U3 small nucleolar RNA-associated protein 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43650 : Sas10/U3 ribonucleoprotein (Utp) family protein
RAP-DB (Rice) LOC_Os01g01510.1 : sas10/Utp3 family protein, expressed
MaizeGDB (Corn) Zm00025a005008
Brachypodium KQK04399 , PNT70526 , KQK04400
Barley -
Wheat TraesCS5A02G398400 , TraesCS7D02G387100 , TraesCS7A02G391500 , TraesCS7B02G293400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G217100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
2 Sobic.002G105101 - -
3 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
4 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
5 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
7 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
8 Sobic.004G224600 expressed protein -
9 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
10 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
11 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
12 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
13 Sobic.004G332400 neurochondrin family protein, putative, expressed -
14 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
15 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
16 Sobic.008G147200 tubulin, putative, expressed -
17 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
18 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
19 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
20 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)


Gene co-expression network
sample Sobic007G217100 Sobic007G217100 Sobic001G052400 Sobic001G052400 Sobic007G217100--Sobic001G052400 Sobic002G105101 Sobic002G105101 Sobic007G217100--Sobic002G105101 Sobic006G125900 Sobic006G125900 Sobic007G217100--Sobic006G125900 Sobic003G042400 Sobic003G042400 Sobic007G217100--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic007G217100--Sobic004G321700 Sobic001G453400 Sobic001G453400 Sobic007G217100--Sobic001G453400 Sobic009G101200 Sobic009G101200 Sobic007G217100--Sobic009G101200 Sobic004G224600 Sobic004G224600 Sobic007G217100--Sobic004G224600 Sobic008G163500 Sobic008G163500 Sobic007G217100--Sobic008G163500 Sobic004G320500 Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic010G003400 Sobic010G003400 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic002G105101--Sobic007G217100 Sobic002G105101--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic002G105101--Sobic008G147200 Sobic009G211200 Sobic009G211200 Sobic002G105101--Sobic009G211200 Sobic010G224700 Sobic010G224700 Sobic002G105101--Sobic010G224700 Sobic010G215900 Sobic010G215900 Sobic002G105101--Sobic010G215900 Sobic002G105101--Sobic004G321700 Sobic009G145101 Sobic009G145101 Sobic002G105101--Sobic009G145101 Sobic003G409200 Sobic003G409200 Sobic002G105101--Sobic003G409200 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G246500 Sobic009G246500 Sobic009G101200--Sobic009G246500 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic004G224600--Sobic009G246500 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic004G224600--Sobic006G086600 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.