Gene annotation
Transcriptome id Sobic.001G453400.2
Synonym SWA2, EDA25, Sb01g042620
Functional annotation CCAAT/enhancer-binding protein, putative, expressed
UniProt A0A1B6QPK3
Pfam PF03914
Panther DB PTHR12048
NCBI CDD -
KEGG Orthology K14832; MAK21, NOC1, ribosome biogenesis protein MAK21
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72440 : CCAAT-binding factor
RAP-DB (Rice) LOC_Os09g02810.1 : CCAAT/enhancer-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a001339
Brachypodium KQK00174 , KQK00173
Barley HORVU6Hr1G053890.10 , HORVU6Hr1G053890.9 , HORVU6Hr1G053890.8 , HORVU6Hr1G053890.7 , HORVU6Hr1G053890.6 , HORVU6Hr1G053890.5 , HORVU6Hr1G053890.4 , HORVU6Hr1G053890.3 , HORVU6Hr1G053890.2 , HORVU6Hr1G053890.1
Wheat TraesCS6D02G193900 , TraesCS6D02G193900 , TraesCS6D02G193900 , TraesCS6B02G239800 , TraesCS6B02G239800 , TraesCS6A02G210800 , TraesCS6A02G210800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
2 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
3 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
4 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
5 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
6 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
7 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
8 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
9 Sobic.010G114900 expressed protein -
10 Sobic.010G102600 pentatricopeptide, putative, expressed -
11 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
12 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
13 Sobic.010G174700 expressed protein -
14 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
15 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
16 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
17 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
18 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
19 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
20 Sobic.002G373950 - -


Gene co-expression network
sample Sobic001G453400 Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic003G042400 Sobic003G042400 Sobic001G376900--Sobic003G042400 Sobic001G376900--Sobic001G453400 Sobic007G126500 Sobic007G126500 Sobic001G376900--Sobic007G126500 Sobic001G376900--Sobic006G086600 Sobic009G158100 Sobic009G158100 Sobic001G376900--Sobic009G158100 Sobic007G168300 Sobic007G168300 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G376900--Sobic001G052400 Sobic001G393900 Sobic001G393900 Sobic001G376900--Sobic001G393900 Sobic003G156500--Sobic001G453400 Sobic009G217200 Sobic009G217200 Sobic003G156500--Sobic009G217200 Sobic001G501400 Sobic001G501400 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic001G358600 Sobic001G358600 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic003G156500--Sobic004G320500 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic006G125900--Sobic007G217100 Sobic006G125900--Sobic010G003400 Sobic007G106700--Sobic001G453400 Sobic007G106700--Sobic010G003400 Sobic002G234300 Sobic002G234300 Sobic007G106700--Sobic002G234300 Sobic006G049600 Sobic006G049600 Sobic007G106700--Sobic006G049600 Sobic002G071400 Sobic002G071400 Sobic007G106700--Sobic002G071400 Sobic004G027500 Sobic004G027500 Sobic007G106700--Sobic004G027500 Sobic007G106700--Sobic001G501400 Sobic007G106700--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic007G106700--Sobic009G246500 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic010G114900--Sobic001G052400
Octagon: transcription factors


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