Gene annotation
Transcriptome id Sobic.010G114900.1,Sobic.010G114900.3
Synonym Sb10g009980
Functional annotation expressed protein
UniProt A0A1W0VSJ4 , A0A194YIK6
Pfam PF08389 PF03810 PF03810 PF08389
Panther DB PTHR10997 PTHR10997:SF9 PTHR10997:SF9 PTHR10997
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0008536Ran GTPase binding GO:0008536Ran GTPase binding GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G26170 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os06g16280.1 : expressed protein
MaizeGDB (Corn) Zm00025a050445
Brachypodium KQK18622 , KQK18623 , KQK18624
Barley HORVU0Hr1G020260.8 , HORVU0Hr1G020260.9 , HORVU0Hr1G020260.4 , HORVU0Hr1G020260.5 , HORVU0Hr1G020260.6 , HORVU0Hr1G020260.7 , HORVU0Hr1G020260.1 , HORVU0Hr1G020260.2 , HORVU0Hr1G020260.3 , HORVU0Hr1G020130.4 , HORVU0Hr1G020130.5 , HORVU0Hr1G020130.1 , HORVU0Hr1G020130.2 , HORVU0Hr1G020130.3 , HORVU0Hr1G020260.14 , HORVU0Hr1G020260.12 , HORVU0Hr1G020260.13 , HORVU0Hr1G020260.10 , HORVU0Hr1G020260.11
Wheat TraesCS7A02G211000 , TraesCS7B02G117700 , TraesCS7D02G212700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
2 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
3 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
4 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
5 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
6 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
7 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
8 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
9 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
10 Sobic.001G453000 no apical meristem protein, putative, expressed -
11 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
12 Sobic.002G179400 DNA binding protein, putative, expressed -
13 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
14 Sobic.001G137000 aberrant pollen transmission 1, putative, expressed -
15 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
16 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
17 Sobic.001G191700 expressed protein -
18 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
20 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1


Gene co-expression network
sample Sobic010G114900 Sobic010G114900 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic001G453400 Sobic001G453400 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G003400 Sobic010G003400 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic007G077900--Sobic003G312100 Sobic007G077900--Sobic010G114900 Sobic010G148932 Sobic010G148932 Sobic007G077900--Sobic010G148932 Sobic007G077900--Sobic001G453400 Sobic002G405500 Sobic002G405500 Sobic007G077900--Sobic002G405500 Sobic001G137000 Sobic001G137000 Sobic007G077900--Sobic001G137000 Sobic003G294600 Sobic003G294600 Sobic007G077900--Sobic003G294600 Sobic007G077900--Sobic010G003400 Sobic002G396500 Sobic002G396500 Sobic007G077900--Sobic002G396500 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic003G312100--Sobic010G148932 Sobic003G233400 Sobic003G233400 Sobic003G312100--Sobic003G233400 Sobic003G312100--Sobic001G137000 Sobic007G019300 Sobic007G019300 Sobic003G312100--Sobic007G019300 Sobic003G072200 Sobic003G072200 Sobic003G312100--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic003G312100--Sobic002G397500 Sobic001G004400 Sobic001G004400 Sobic003G312100--Sobic001G004400 Sobic004G248600 Sobic004G248600 Sobic003G312100--Sobic004G248600 Sobic003G312100--Sobic002G396500 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic003G143800 Sobic003G143800 Sobic007G155500--Sobic003G143800 Sobic007G155500--Sobic010G114900 Sobic007G155500--Sobic001G453000 Sobic006G125500 Sobic006G125500 Sobic007G155500--Sobic006G125500 Sobic006G166200 Sobic006G166200 Sobic007G155500--Sobic006G166200 Sobic008G054600 Sobic008G054600 Sobic007G155500--Sobic008G054600 Sobic002G179400 Sobic002G179400 Sobic007G155500--Sobic002G179400 Sobic005G026400 Sobic005G026400 Sobic007G155500--Sobic005G026400 Sobic008G124800 Sobic008G124800 Sobic007G155500--Sobic008G124800 Sobic005G010900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic005G010900--Sobic001G373800 Sobic005G010900--Sobic010G114900 Sobic004G315500 Sobic004G315500 Sobic005G010900--Sobic004G315500 Sobic005G010900--Sobic003G199300 Sobic002G371600 Sobic002G371600 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic005G010900--Sobic006G125500 Sobic003G123100 Sobic003G123100 Sobic005G010900--Sobic003G123100 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900
Octagon: transcription factors


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