Gene annotation
Transcriptome id Sobic.009G217200.1,Sobic.009G217200.2,Sobic.009G217200.3
Synonym NRPA1
Functional annotation DNA-directed RNA polymerase III subunit RPC1, putative, expressed
UniProt A0A1Z5R3S8 , A0A1B6PAK0 , A0A1B6P9V2
Pfam PF05000 PF04983 PF04997 PF00623 PF04998 PF05000 PF04983 PF00623 PF04998 PF05000 PF04997 PF04983 PF00623 PF04998
Panther DB PTHR19376 PTHR19376:SF11
NCBI CDD -
KEGG Orthology K02999; RPA1, DNA-directed RNA polymerase I subunit RPA1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding GO:0008270zinc ion binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G57660 : nuclear RNA polymerase A1
RAP-DB (Rice) LOC_Os04g41490.1 : DNA-directed RNA polymerase III subunit RPC1, putative, expressed
MaizeGDB (Corn) Zm00025a055384 , Zm00025a002346
Brachypodium KQK12276 , PNT73842 , KQJ92760 , KQJ92761 , KQJ92762 , KQJ99397 , PNT68584
Barley HORVU6Hr1G027050.1 , HORVU5Hr1G117770.8 , HORVU5Hr1G117770.9 , HORVU5Hr1G117770.6 , HORVU5Hr1G117770.7 , HORVU5Hr1G117770.4 , HORVU5Hr1G117770.5 , HORVU5Hr1G117770.2 , HORVU5Hr1G117770.3 , HORVU5Hr1G117770.1 , HORVU0Hr1G014220.1 , HORVU4Hr1G085240.1 , HORVU7Hr1G011970.1 , HORVU1Hr1G025160.19 , HORVU1Hr1G025160.15 , HORVU1Hr1G025160.14 , HORVU1Hr1G025160.17 , HORVU1Hr1G025160.16 , HORVU1Hr1G025160.11 , HORVU1Hr1G025160.10 , HORVU1Hr1G025160.13 , HORVU1Hr1G025160.12 , HORVU1Hr1G025160.8 , HORVU6Hr1G027050.13 , HORVU6Hr1G027050.10 , HORVU6Hr1G027050.11 , HORVU6Hr1G027050.9 , HORVU6Hr1G027050.2 , HORVU6Hr1G027050.3 , HORVU6Hr1G027050.4 , HORVU6Hr1G027050.5 , HORVU6Hr1G027050.6 , HORVU6Hr1G027050.7 , HORVU5Hr1G117770.13 , HORVU1Hr1G025160.9 , HORVU1Hr1G025160.1 , HORVU5Hr1G117770.11 , HORVU1Hr1G025160.3 , HORVU1Hr1G025160.2 , HORVU1Hr1G025160.5 , HORVU1Hr1G025160.4 , HORVU1Hr1G025160.7 , HORVU1Hr1G025160.6 , HORVU5Hr1G117770.14 , HORVU5Hr1G117770.15 , HORVU5Hr1G117770.16 , HORVU5Hr1G117770.17 , HORVU5Hr1G117770.10 , HORVU5Hr1G117770.12
Wheat TraesCS3B02G494500 , TraesCS3D02G448000 , TraesCS5D02G515800 , TraesCS1B02G134500 , TraesCS4A02G357100 , TraesCS5B02G515600 , TraesCS1A02G114500
Populus PNT29908


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
2 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
3 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
4 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
5 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
6 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
7 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
8 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
9 Sobic.010G114900 expressed protein -
10 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
11 Sobic.001G335300 NOC3 - Putative nucleolar complex subunit 3, expressed K14834: nucleolar complex protein 3
12 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
13 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
14 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
15 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
16 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
17 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
18 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
19 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
20 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1


Gene co-expression network
sample Sobic009G217200 Sobic009G217200 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic006G221600 Sobic006G221600 Sobic009G217200--Sobic006G221600 Sobic010G003400 Sobic010G003400 Sobic009G217200--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic009G217200--Sobic001G453400 Sobic002G234300 Sobic002G234300 Sobic009G217200--Sobic002G234300 Sobic008G049100 Sobic008G049100 Sobic009G217200--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic009G217200--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic009G217200--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic009G217200--Sobic010G114900 Sobic003G156500--Sobic001G453400 Sobic003G156500--Sobic009G217200 Sobic001G501400 Sobic001G501400 Sobic003G156500--Sobic001G501400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic001G358600 Sobic001G358600 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic006G221600--Sobic009G217200 Sobic006G221600--Sobic002G071400 Sobic006G221600--Sobic010G114900 Sobic006G221600--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic006G221600--Sobic003G199300 Sobic006G221600--Sobic002G234300 Sobic010G017900 Sobic010G017900 Sobic006G221600--Sobic010G017900 Sobic010G205900 Sobic010G205900 Sobic006G221600--Sobic010G205900 Sobic007G056200 Sobic007G056200 Sobic006G221600--Sobic007G056200 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic002G234300--Sobic009G217200 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic010G114900--Sobic001G052400
Octagon: transcription factors


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