Gene annotation
Transcriptome id Sobic.001G335300.1
Synonym Sb01g032360
Functional annotation NOC3 - Putative nucleolar complex subunit 3, expressed
UniProt C5WWJ1
Pfam PF03914 PF07540
Panther DB PTHR14428 PTHR14428:SF5
NCBI CDD KOG2153; Protein involved in the nuclear export of pre-ribosomes
KEGG Orthology K14834; nucleolar complex protein 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79150 : binding
RAP-DB (Rice) LOC_Os06g30320.1 : NOC3 - Putative nucleolar complex subunit 3, expressed
MaizeGDB (Corn) Zm00025a002882
Brachypodium KQK21286
Barley HORVU5Hr1G026060.1 , HORVU5Hr1G026060.2 , HORVU5Hr1G026060.4 , HORVU5Hr1G026060.6
Wheat TraesCS5A02G096400 , TraesCS5B02G102300 , TraesCS5D02G109100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
2 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
3 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
4 Sobic.006G047900 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
5 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
6 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.010G017900 NUC153 domain containing protein, expressed K14788: NOL10, ribosome biogenesis protein ENP2
9 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
10 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
11 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
12 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
13 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
14 Sobic.006G049600 methyltransferase domain containing protein, expressed -
15 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
16 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
17 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
18 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
19 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
20 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3


Gene co-expression network
sample Sobic001G335300 Sobic001G335300 Sobic009G217200 Sobic009G217200 Sobic001G335300--Sobic009G217200 Sobic006G221600 Sobic006G221600 Sobic001G335300--Sobic006G221600 Sobic009G246500 Sobic009G246500 Sobic001G335300--Sobic009G246500 Sobic006G047900 Sobic006G047900 Sobic001G335300--Sobic006G047900 Sobic010G003400 Sobic010G003400 Sobic001G335300--Sobic010G003400 Sobic009G101200 Sobic009G101200 Sobic001G335300--Sobic009G101200 Sobic008G049100 Sobic008G049100 Sobic001G335300--Sobic008G049100 Sobic010G017900 Sobic010G017900 Sobic001G335300--Sobic010G017900 Sobic001G024000 Sobic001G024000 Sobic001G335300--Sobic001G024000 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic009G217200--Sobic001G453400 Sobic002G234300 Sobic002G234300 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G217200--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic009G217200--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic009G217200--Sobic010G114900 Sobic006G221600--Sobic009G217200 Sobic006G221600--Sobic002G071400 Sobic006G221600--Sobic010G114900 Sobic006G221600--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic006G221600--Sobic003G199300 Sobic006G221600--Sobic002G234300 Sobic006G221600--Sobic010G017900 Sobic010G205900 Sobic010G205900 Sobic006G221600--Sobic010G205900 Sobic007G056200 Sobic007G056200 Sobic006G221600--Sobic007G056200 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic003G375200 Sobic003G375200 Sobic006G047900--Sobic003G375200 Sobic006G047900--Sobic001G335300 Sobic001G450000 Sobic001G450000 Sobic006G047900--Sobic001G450000 Sobic004G034700 Sobic004G034700 Sobic006G047900--Sobic004G034700 Sobic010G080700 Sobic010G080700 Sobic006G047900--Sobic010G080700 Sobic006G047900--Sobic010G003400 Sobic001G451300 Sobic001G451300 Sobic006G047900--Sobic001G451300 Sobic004G005100 Sobic004G005100 Sobic006G047900--Sobic004G005100 Sobic002G179400 Sobic002G179400 Sobic006G047900--Sobic002G179400 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic010G017900--Sobic006G086600 Sobic010G017900--Sobic006G221600 Sobic010G017900--Sobic010G003400 Sobic004G027500 Sobic004G027500 Sobic010G017900--Sobic004G027500 Sobic010G017900--Sobic009G101200 Sobic007G077900 Sobic007G077900 Sobic010G017900--Sobic007G077900 Sobic010G017900--Sobic009G246500 Sobic010G017900--Sobic001G453400 Sobic010G017900--Sobic002G071400 Sobic004G215900 Sobic004G215900 Sobic001G024000--Sobic004G215900 Sobic001G024000--Sobic010G205900 Sobic008G111600 Sobic008G111600 Sobic001G024000--Sobic008G111600 Sobic001G024000--Sobic009G246500 Sobic008G068100 Sobic008G068100 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic001G024000--Sobic008G049100 Sobic001G024000--Sobic003G123200 Sobic002G003300 Sobic002G003300 Sobic001G024000--Sobic002G003300
Octagon: transcription factors


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