Gene annotation
Transcriptome id Sobic.004G034700.1
Synonym Sb04g003000
Functional annotation cleavage and polyadenylation specificity factor, putative, expressed
UniProt C5XTZ1
Pfam PF03178 PF10433
Panther DB PTHR10644 PTHR10644:SF1
NCBI CDD -
KEGG Orthology K12830; SF3B3, SAP130, splicing factor 3B subunit 3
Gene Ontology GO:0005634; nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G55200 : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
RAP-DB (Rice) LOC_Os02g04480.1 : cleavage and polyadenylation specificity factor, putative, expressed
MaizeGDB (Corn) Zm00025a016339 , Zm00025a018919
Brachypodium KQJ93233
Barley HORVU6Hr1G019130.2 , HORVU6Hr1G019130.1
Wheat TraesCS6D02G095000 , TraesCS6D02G095000 , TraesCS6A02G107200 , TraesCS6B02G135400 , TraesCS6B02G135400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
2 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
3 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
4 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
5 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
6 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
7 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
8 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
9 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
10 Sobic.009G007700 expressed protein -
11 Sobic.004G155600 dnaJ domain containing protein, expressed -
12 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
13 Sobic.010G174700 expressed protein -
14 Sobic.010G262100 expressed protein -
15 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
16 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
17 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
18 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.006G049600 methyltransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G034700 Sobic004G034700 Sobic001G451300 Sobic001G451300 Sobic004G034700--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic004G034700--Sobic002G412700 Sobic001G536000 Sobic001G536000 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic010G138900 Sobic010G138900 Sobic004G034700--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic004G034700--Sobic001G248100 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic001G536000--Sobic004G034700 Sobic001G536000--Sobic009G142000 Sobic002G405500 Sobic002G405500 Sobic001G536000--Sobic002G405500 Sobic001G536000--Sobic001G451300 Sobic001G239800 Sobic001G239800 Sobic001G536000--Sobic001G239800 Sobic001G453000 Sobic001G453000 Sobic001G536000--Sobic001G453000 Sobic003G375200 Sobic003G375200 Sobic001G536000--Sobic003G375200 Sobic006G112700 Sobic006G112700 Sobic001G536000--Sobic006G112700 Sobic003G294600 Sobic003G294600 Sobic001G536000--Sobic003G294600 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic009G109200 Sobic009G109200 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic004G131300 Sobic004G131300 Sobic004G256500--Sobic004G131300 Sobic009G234700 Sobic009G234700 Sobic004G256500--Sobic009G234700 Sobic001G145400 Sobic001G145400 Sobic004G256500--Sobic001G145400 Sobic002G133300 Sobic002G133300 Sobic004G256500--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G256500--Sobic002G142900 Sobic004G053500 Sobic004G053500 Sobic004G256500--Sobic004G053500 Sobic002G371700 Sobic002G371700 Sobic004G256500--Sobic002G371700 Sobic001G287500 Sobic001G287500 Sobic004G256500--Sobic001G287500 Sobic001G087600 Sobic001G087600 Sobic004G256500--Sobic001G087600 Sobic006G036100--Sobic010G174700 Sobic001G540800 Sobic001G540800 Sobic006G036100--Sobic001G540800 Sobic006G036100--Sobic010G053600 Sobic006G036100--Sobic001G004400 Sobic006G036100--Sobic002G391600 Sobic006G036100--Sobic002G133300 Sobic003G266001 Sobic003G266001 Sobic006G036100--Sobic003G266001 Sobic006G036100--Sobic003G294600 Sobic006G036100--Sobic001G352900 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic008G088842 Sobic008G088842 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic010G138900--Sobic001G451300 Sobic010G138900--Sobic009G142000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic010G138900--Sobic004G034700 Sobic010G138900--Sobic002G043100 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500
Octagon: transcription factors


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