Gene annotation
Transcriptome id Sobic.004G256000.1
Synonym Sb04g029465
Functional annotation NOL1/NOP2/sun family protein, putative, expressed
UniProt A0A194YRP1
Pfam PF17125 PF01189
Panther DB PTHR22807 PTHR22807:SF30
NCBI CDD -
KEGG Orthology K14835; 25S rRNA (cytosine2870-C5)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G26600 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os09g37860.1 : NOL1/NOP2/sun family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032549 , Zm00025a021867
Brachypodium KQK01527
Barley -
Wheat TraesCS6A02G286600 , TraesCS6B02G315600 , TraesCS6D02G267300
Populus -


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cDNA sequences
Sobic.004G256000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
2 Sobic.002G112100 - K14811: ATP-dependent RNA helicase DBP3
3 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
4 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
5 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
6 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
7 Sobic.008G169200 SRP40, C-terminal domain containing protein, expressed -
8 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
9 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
11 Sobic.002G047000 YT521-B, putative, expressed -
12 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
13 Sobic.009G016400 RNA recognition motif containing protein, expressed -
14 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
15 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
16 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
17 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
18 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
19 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
20 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -


Gene co-expression network
sample Sobic004G256000 Sobic004G256000 Sobic002G234300 Sobic002G234300 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic009G246500 Sobic009G246500 Sobic004G256000--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic004G256000--Sobic002G071400 Sobic009G249800 Sobic009G249800 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic008G049100 Sobic008G049100 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000 Sobic002G234300--Sobic002G071400 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300 Sobic002G112100--Sobic004G256000 Sobic002G112100--Sobic008G160000 Sobic002G112100--Sobic002G234300 Sobic002G112100--Sobic009G246500 Sobic002G112100--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic002G112100--Sobic001G052400 Sobic001G251100 Sobic001G251100 Sobic002G112100--Sobic001G251100 Sobic006G086600 Sobic006G086600 Sobic002G112100--Sobic006G086600 Sobic002G112100--Sobic001G453400 Sobic009G246500--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic009G249800--Sobic004G256000 Sobic006G084000 Sobic006G084000 Sobic006G269900--Sobic006G084000 Sobic006G269900--Sobic008G160000 Sobic006G269900--Sobic004G256000 Sobic006G269900--Sobic006G010400 Sobic006G269900--Sobic009G249800 Sobic003G407600 Sobic003G407600 Sobic006G269900--Sobic003G407600 Sobic004G252000 Sobic004G252000 Sobic006G269900--Sobic004G252000 Sobic010G247400 Sobic010G247400 Sobic006G269900--Sobic010G247400 Sobic009G045900 Sobic009G045900 Sobic006G269900--Sobic009G045900 Sobic008G169200--Sobic004G256000 Sobic008G169200--Sobic009G249800 Sobic008G169200--Sobic009G045900 Sobic002G047000 Sobic002G047000 Sobic008G169200--Sobic002G047000 Sobic010G236600 Sobic010G236600 Sobic008G169200--Sobic010G236600 Sobic008G169200--Sobic006G269900 Sobic008G169200--Sobic004G252000 Sobic010G233100 Sobic010G233100 Sobic008G169200--Sobic010G233100 Sobic008G169200--Sobic002G234300 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic008G160000--Sobic004G224600
Octagon: transcription factors


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