Gene annotation
Transcriptome id Sobic.008G169200.2,Sobic.008G169200.1,Sobic.008G169200.3
Synonym Sb08g021440
Functional annotation SRP40, C-terminal domain containing protein, expressed
UniProt A0A1B6PE65 , A0A1B6PE77
Pfam PF05022
Panther DB PTHR23216
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57120 : -
RAP-DB (Rice) LOC_Os12g41930.1 : SRP40, C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025367
Brachypodium KQJ85795
Barley HORVU5Hr1G009830.1 , HORVU5Hr1G009830.3 , HORVU5Hr1G009830.2 , HORVU5Hr1G009830.5 , HORVU5Hr1G009830.7 , HORVU5Hr1G009830.6 , HORVU5Hr1G009830.9 , HORVU5Hr1G009830.8 , HORVU5Hr1G009830.11
Wheat TraesCS5A02G040600 , TraesCS5A02G040600 , TraesCS5D02G047700 , TraesCS5D02G047700 , TraesCS5B02G041800 , TraesCS5B02G041800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G169200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
2 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
3 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.002G047000 YT521-B, putative, expressed -
5 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
6 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
7 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
8 Sobic.010G233100 - -
9 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
10 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
11 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
12 Sobic.002G112100 - K14811: ATP-dependent RNA helicase DBP3
13 Sobic.010G142700 - -
14 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
15 Sobic.010G103200 ThiF family domain containing protein, putative, expressed -
16 Sobic.001G431400 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
17 Sobic.002G246700 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
18 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
20 Sobic.002G408900 adenyl cyclase, putative, expressed -


Gene co-expression network
sample Sobic008G169200 Sobic008G169200 Sobic004G256000 Sobic004G256000 Sobic008G169200--Sobic004G256000 Sobic009G249800 Sobic009G249800 Sobic008G169200--Sobic009G249800 Sobic009G045900 Sobic009G045900 Sobic008G169200--Sobic009G045900 Sobic002G047000 Sobic002G047000 Sobic008G169200--Sobic002G047000 Sobic010G236600 Sobic010G236600 Sobic008G169200--Sobic010G236600 Sobic006G269900 Sobic006G269900 Sobic008G169200--Sobic006G269900 Sobic004G252000 Sobic004G252000 Sobic008G169200--Sobic004G252000 Sobic010G233100 Sobic010G233100 Sobic008G169200--Sobic010G233100 Sobic002G234300 Sobic002G234300 Sobic008G169200--Sobic002G234300 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic009G246500 Sobic009G246500 Sobic004G256000--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic004G256000--Sobic002G071400 Sobic004G256000--Sobic009G249800 Sobic004G256000--Sobic006G269900 Sobic004G256000--Sobic008G169200 Sobic008G049100 Sobic008G049100 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic001G251600 Sobic001G251600 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic009G249800--Sobic004G256000 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic009G045900--Sobic002G047000 Sobic009G045900--Sobic002G246700 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic002G047000--Sobic009G045900 Sobic002G047000--Sobic008G160000 Sobic002G047000--Sobic002G234300 Sobic001G431400 Sobic001G431400 Sobic002G047000--Sobic001G431400 Sobic002G047000--Sobic004G256000 Sobic010G142700 Sobic010G142700 Sobic002G047000--Sobic010G142700 Sobic001G052400 Sobic001G052400 Sobic002G047000--Sobic001G052400 Sobic009G016400 Sobic009G016400 Sobic002G047000--Sobic009G016400 Sobic002G047000--Sobic008G169200 Sobic006G208400 Sobic006G208400 Sobic010G236600--Sobic006G208400 Sobic010G188000 Sobic010G188000 Sobic010G236600--Sobic010G188000 Sobic010G236600--Sobic009G045900 Sobic010G236600--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G250800 Sobic010G250800 Sobic010G236600--Sobic010G250800 Sobic001G368100 Sobic001G368100 Sobic010G236600--Sobic001G368100 Sobic002G056400 Sobic002G056400 Sobic010G236600--Sobic002G056400 Sobic006G084000 Sobic006G084000 Sobic006G269900--Sobic006G084000 Sobic006G269900--Sobic008G160000 Sobic006G269900--Sobic004G256000 Sobic006G269900--Sobic006G010400 Sobic006G269900--Sobic009G249800 Sobic003G407600 Sobic003G407600 Sobic006G269900--Sobic003G407600 Sobic006G269900--Sobic004G252000 Sobic010G247400 Sobic010G247400 Sobic006G269900--Sobic010G247400 Sobic006G269900--Sobic009G045900 Sobic002G423500 Sobic002G423500 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G047200 Sobic004G047200 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic004G252000--Sobic006G084000 Sobic010G233100--Sobic008G169200 Sobic010G233100--Sobic010G236600 Sobic010G233100--Sobic009G249800 Sobic005G163700 Sobic005G163700 Sobic010G233100--Sobic005G163700 Sobic010G233100--Sobic001G460500 Sobic001G004200 Sobic001G004200 Sobic010G233100--Sobic001G004200 Sobic008G088857 Sobic008G088857 Sobic010G233100--Sobic008G088857 Sobic009G033100 Sobic009G033100 Sobic010G233100--Sobic009G033100 Sobic003G267000 Sobic003G267000 Sobic010G233100--Sobic003G267000 Sobic002G234300--Sobic002G071400 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.