Gene annotation
Transcriptome id Sobic.006G035500.1,Sobic.006G035500.3,Sobic.006G035500.2
Synonym Sb06g004550, AT-P4H-1
Functional annotation oxidoreductase, putative, expressed
UniProt A0A1Z5RC46 , A0A1Z5RC13 , C5YDN4
Pfam PF03171
Panther DB PTHR10869 PTHR10869:SF42
NCBI CDD KOG1591; Prolyl 4-hydroxylase alpha subunit
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G43080 : P4H isoform 1
RAP-DB (Rice) LOC_Os04g27850.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a011952
Brachypodium PNT60814 , KQJ82080 , KQJ82081
Barley HORVU2Hr1G066950.4 , HORVU2Hr1G066950.5 , HORVU2Hr1G066950.2 , HORVU2Hr1G066950.3 , HORVU2Hr1G066950.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G035500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
2 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
3 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
4 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
5 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
6 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
7 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
8 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
9 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
10 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
11 Sobic.001G536000 actin, putative, expressed K11340: ACTL6A, actin-like protein 6A
12 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
13 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
14 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
15 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
16 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
17 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
18 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
19 Sobic.010G103200 ThiF family domain containing protein, putative, expressed -
20 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase


Gene co-expression network
sample Sobic006G035500 Sobic006G035500 Sobic002G412700 Sobic002G412700 Sobic006G035500--Sobic002G412700 Sobic007G114000 Sobic007G114000 Sobic006G035500--Sobic007G114000 Sobic010G188000 Sobic010G188000 Sobic006G035500--Sobic010G188000 Sobic003G167900 Sobic003G167900 Sobic006G035500--Sobic003G167900 Sobic004G034700 Sobic004G034700 Sobic006G035500--Sobic004G034700 Sobic006G073200 Sobic006G073200 Sobic006G035500--Sobic006G073200 Sobic004G275600 Sobic004G275600 Sobic006G035500--Sobic004G275600 Sobic007G106700 Sobic007G106700 Sobic006G035500--Sobic007G106700 Sobic007G071900 Sobic007G071900 Sobic006G035500--Sobic007G071900 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic003G167900--Sobic006G073200 Sobic002G083900 Sobic002G083900 Sobic003G167900--Sobic002G083900 Sobic008G157200 Sobic008G157200 Sobic003G167900--Sobic008G157200 Sobic003G167900--Sobic002G412700 Sobic001G250700 Sobic001G250700 Sobic003G167900--Sobic001G250700 Sobic003G167900--Sobic001G248100 Sobic008G000400 Sobic008G000400 Sobic003G167900--Sobic008G000400 Sobic003G167900--Sobic006G035500 Sobic010G206300 Sobic010G206300 Sobic003G167900--Sobic010G206300 Sobic004G034700--Sobic001G451300 Sobic004G034700--Sobic002G412700 Sobic001G536000 Sobic001G536000 Sobic004G034700--Sobic001G536000 Sobic010G053600 Sobic010G053600 Sobic004G034700--Sobic010G053600 Sobic004G256500 Sobic004G256500 Sobic004G034700--Sobic004G256500 Sobic006G036100 Sobic006G036100 Sobic004G034700--Sobic006G036100 Sobic001G020000 Sobic001G020000 Sobic004G034700--Sobic001G020000 Sobic010G138900 Sobic010G138900 Sobic004G034700--Sobic010G138900 Sobic004G034700--Sobic001G248100 Sobic006G073200--Sobic008G157200 Sobic004G257100 Sobic004G257100 Sobic006G073200--Sobic004G257100 Sobic001G431000 Sobic001G431000 Sobic006G073200--Sobic001G431000 Sobic001G537500 Sobic001G537500 Sobic006G073200--Sobic001G537500 Sobic001G493200 Sobic001G493200 Sobic006G073200--Sobic001G493200 Sobic008G135200 Sobic008G135200 Sobic006G073200--Sobic008G135200 Sobic006G073200--Sobic006G036100 Sobic004G131300 Sobic004G131300 Sobic006G073200--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic006G073200--Sobic001G251100 Sobic003G309300 Sobic003G309300 Sobic004G275600--Sobic003G309300 Sobic003G165101 Sobic003G165101 Sobic004G275600--Sobic003G165101 Sobic004G275600--Sobic001G537500 Sobic009G124000 Sobic009G124000 Sobic004G275600--Sobic009G124000 Sobic004G275600--Sobic006G073200 Sobic004G275600--Sobic007G071900 Sobic003G420900 Sobic003G420900 Sobic004G275600--Sobic003G420900 Sobic008G067100 Sobic008G067100 Sobic004G275600--Sobic008G067100 Sobic004G275600--Sobic004G257100 Sobic001G453400 Sobic001G453400 Sobic007G106700--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic007G106700--Sobic010G003400 Sobic002G234300 Sobic002G234300 Sobic007G106700--Sobic002G234300 Sobic006G049600 Sobic006G049600 Sobic007G106700--Sobic006G049600 Sobic002G071400 Sobic002G071400 Sobic007G106700--Sobic002G071400 Sobic004G027500 Sobic004G027500 Sobic007G106700--Sobic004G027500 Sobic001G501400 Sobic001G501400 Sobic007G106700--Sobic001G501400 Sobic003G156500 Sobic003G156500 Sobic007G106700--Sobic003G156500 Sobic009G246500 Sobic009G246500 Sobic007G106700--Sobic009G246500 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic001G455800 Sobic001G455800 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200
Octagon: transcription factors


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