Gene annotation
Transcriptome id Sobic.007G114000.1
Synonym Sb07g018230, HDA6, SIL1, ATHDA6, RPD3B, AXE1, RTS1
Functional annotation histone deacetylase, putative, expressed
UniProt C5YKG8
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF109
NCBI CDD -
KEGG Orthology K06067; histone deacetylase 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63110 : histone deacetylase 6
RAP-DB (Rice) LOC_Os08g25570.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a030805 , Zm00025a051169
Brachypodium KQJ94026 , KQJ96306 , KQJ96307
Barley HORVU7Hr1G085870.9 , HORVU7Hr1G085870.8 , HORVU7Hr1G085870.7 , HORVU7Hr1G085870.6 , HORVU7Hr1G085870.5 , HORVU7Hr1G085870.4 , HORVU7Hr1G085870.3 , HORVU7Hr1G085870.2 , HORVU7Hr1G085870.1 , HORVU6Hr1G038010.6 , HORVU6Hr1G038010.7 , HORVU6Hr1G038010.1 , HORVU6Hr1G038010.2 , HORVU6Hr1G038010.3 , HORVU6Hr1G038010.8 , HORVU6Hr1G038010.4 , HORVU6Hr1G038010.5
Wheat TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7D02G356800 , TraesCS6B02G210200 , TraesCS6D02G168400 , TraesCS6D02G168400 , TraesCS6B02G210200 , TraesCS7B02G261800 , TraesCS6A02G181100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
3 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
4 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
5 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.010G161525 - -
7 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
8 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
9 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
10 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
11 Sobic.002G056400 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
12 Sobic.004G137500 expressed protein -
13 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
14 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
15 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
16 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
18 Sobic.004G305700 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
19 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
20 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88


Gene co-expression network
sample Sobic007G114000 Sobic007G114000 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic002G262100 Sobic002G262100 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic006G035500--Sobic002G412700 Sobic006G035500--Sobic007G114000 Sobic006G035500--Sobic010G188000 Sobic003G167900 Sobic003G167900 Sobic006G035500--Sobic003G167900 Sobic004G034700 Sobic004G034700 Sobic006G035500--Sobic004G034700 Sobic006G073200 Sobic006G073200 Sobic006G035500--Sobic006G073200 Sobic004G275600 Sobic004G275600 Sobic006G035500--Sobic004G275600 Sobic007G106700 Sobic007G106700 Sobic006G035500--Sobic007G106700 Sobic007G071900 Sobic007G071900 Sobic006G035500--Sobic007G071900 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic002G152900--Sobic004G038100 Sobic002G214700 Sobic002G214700 Sobic002G152900--Sobic002G214700 Sobic010G250800 Sobic010G250800 Sobic002G152900--Sobic010G250800 Sobic002G152900--Sobic007G114000 Sobic002G152900--Sobic001G368100 Sobic004G215900 Sobic004G215900 Sobic002G152900--Sobic004G215900 Sobic002G056400 Sobic002G056400 Sobic002G152900--Sobic002G056400 Sobic003G250900 Sobic003G250900 Sobic002G152900--Sobic003G250900 Sobic002G152900--Sobic006G181800 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic005G098000 Sobic005G098000 Sobic010G161525--Sobic005G098000 Sobic010G134100 Sobic010G134100 Sobic010G161525--Sobic010G134100 Sobic003G235700 Sobic003G235700 Sobic010G161525--Sobic003G235700 Sobic010G161525--Sobic007G114000 Sobic004G212100 Sobic004G212100 Sobic010G161525--Sobic004G212100 Sobic001G167500 Sobic001G167500 Sobic010G161525--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic010G161525--Sobic002G367800 Sobic007G188600 Sobic007G188600 Sobic010G161525--Sobic007G188600 Sobic002G071100 Sobic002G071100 Sobic010G161525--Sobic002G071100 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic006G157000--Sobic007G114000 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic006G071628 Sobic006G071628 Sobic001G368100--Sobic006G071628 Sobic001G368100--Sobic002G152900 Sobic001G368100--Sobic010G188000 Sobic007G139500 Sobic007G139500 Sobic001G368100--Sobic007G139500 Sobic004G215700 Sobic004G215700 Sobic001G368100--Sobic004G215700 Sobic009G214100 Sobic009G214100 Sobic001G368100--Sobic009G214100 Sobic007G173000 Sobic007G173000 Sobic001G368100--Sobic007G173000 Sobic004G156200 Sobic004G156200 Sobic001G368100--Sobic004G156200 Sobic001G368100--Sobic010G236600
Octagon: transcription factors


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