Gene annotation
Transcriptome id Sobic.004G305700.1
Synonym 1, Sb04g033870, ATCYCD2, CYCD2
Functional annotation cyclin, putative, expressed
UniProt C5XSR8
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF219
NCBI CDD KOG0656; G1/S-specific cyclin D
KEGG Orthology K18810; cyclin D1/2/4, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G65420 : CYCLIN D4;1
RAP-DB (Rice) LOC_Os06g11410.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a022185 , Zm00025a033120
Brachypodium KQK01797
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
2 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
3 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
4 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
5 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
6 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
7 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
8 Sobic.004G082700 PPR repeat containing protein, expressed -
9 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
10 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
11 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
12 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
13 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
14 Sobic.008G100700 SSXT protein, putative, expressed -
15 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
16 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
17 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
18 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
19 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
20 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein


Gene co-expression network
sample Sobic004G305700 Sobic004G305700 Sobic001G008500 Sobic001G008500 Sobic004G305700--Sobic001G008500 Sobic007G114000 Sobic007G114000 Sobic004G305700--Sobic007G114000 Sobic009G071700 Sobic009G071700 Sobic004G305700--Sobic009G071700 Sobic001G371100 Sobic001G371100 Sobic004G305700--Sobic001G371100 Sobic004G047200 Sobic004G047200 Sobic004G305700--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic004G305700--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic004G305700--Sobic003G008600 Sobic004G082700 Sobic004G082700 Sobic004G305700--Sobic004G082700 Sobic003G211100 Sobic003G211100 Sobic004G305700--Sobic003G211100 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic007G114000--Sobic009G071700 Sobic010G161525 Sobic010G161525 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic003G008600--Sobic001G008500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic003G008600--Sobic004G215700 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic007G108100 Sobic007G108100 Sobic003G211100--Sobic007G108100 Sobic002G045100 Sobic002G045100 Sobic003G211100--Sobic002G045100 Sobic003G117100 Sobic003G117100 Sobic003G211100--Sobic003G117100 Sobic003G211100--Sobic007G137350 Sobic010G001800 Sobic010G001800 Sobic003G211100--Sobic010G001800 Sobic003G211100--Sobic001G371100 Sobic003G211100--Sobic001G530800 Sobic010G018000 Sobic010G018000 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700
Octagon: transcription factors


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