Gene annotation
Transcriptome id Sobic.003G211100.1
Synonym Sb03g027110
Functional annotation hyaluronan/mRNA binding family domain containing protein, expressed
UniProt C5XQ93
Pfam PF09598 PF04774
Panther DB PTHR12299 PTHR12299:SF26
NCBI CDD KOG2945; Predicted RNA-binding protein
KEGG Orthology K13199; plasminogen activator inhibitor 1 RNA-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17520 : Hyaluronan / mRNA binding family
RAP-DB (Rice) LOC_Os01g41880.1 : hyaluronan/mRNA binding family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028631 , Zm00025a027773 , Zm00025a027769
Brachypodium KQK04600
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G211100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
2 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
3 Sobic.003G117100 h/ACA ribonucleoprotein complex subunit 4, putative, expressed K11131: DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
4 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
5 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
6 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
7 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
8 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
9 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
10 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
11 Sobic.008G008300 expressed protein -
12 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
13 Sobic.004G305700 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
14 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
15 Sobic.003G310600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed -
16 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
17 Sobic.001G132900 expressed protein -
18 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
19 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
20 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic003G211100 Sobic003G211100 Sobic007G108100 Sobic007G108100 Sobic003G211100--Sobic007G108100 Sobic002G045100 Sobic002G045100 Sobic003G211100--Sobic002G045100 Sobic003G117100 Sobic003G117100 Sobic003G211100--Sobic003G117100 Sobic007G137350 Sobic007G137350 Sobic003G211100--Sobic007G137350 Sobic010G001800 Sobic010G001800 Sobic003G211100--Sobic010G001800 Sobic001G371100 Sobic001G371100 Sobic003G211100--Sobic001G371100 Sobic001G530800 Sobic001G530800 Sobic003G211100--Sobic001G530800 Sobic010G018000 Sobic010G018000 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700 Sobic007G108100--Sobic010G001800 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic007G108100--Sobic003G211100 Sobic007G108100--Sobic002G045100 Sobic009G012700 Sobic009G012700 Sobic007G108100--Sobic009G012700 Sobic001G493400 Sobic001G493400 Sobic007G108100--Sobic001G493400 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic002G045100--Sobic010G018000 Sobic002G045100--Sobic001G371100 Sobic001G477900 Sobic001G477900 Sobic003G117100--Sobic001G477900 Sobic003G117100--Sobic003G211100 Sobic010G067900 Sobic010G067900 Sobic003G117100--Sobic010G067900 Sobic008G147500 Sobic008G147500 Sobic003G117100--Sobic008G147500 Sobic004G082700 Sobic004G082700 Sobic003G117100--Sobic004G082700 Sobic003G117100--Sobic001G493400 Sobic003G279800 Sobic003G279800 Sobic003G117100--Sobic003G279800 Sobic004G190600 Sobic004G190600 Sobic003G117100--Sobic004G190600 Sobic002G145300 Sobic002G145300 Sobic003G117100--Sobic002G145300 Sobic009G071700 Sobic009G071700 Sobic007G137350--Sobic009G071700 Sobic004G173100 Sobic004G173100 Sobic007G137350--Sobic004G173100 Sobic007G092200 Sobic007G092200 Sobic007G137350--Sobic007G092200 Sobic005G100900 Sobic005G100900 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic007G137350--Sobic004G082700 Sobic006G251600 Sobic006G251600 Sobic007G137350--Sobic006G251600 Sobic001G157300 Sobic001G157300 Sobic007G137350--Sobic001G157300 Sobic006G198600 Sobic006G198600 Sobic007G137350--Sobic006G198600 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic010G001800--Sobic007G108100 Sobic002G241500 Sobic002G241500 Sobic010G001800--Sobic002G241500 Sobic010G159100 Sobic010G159100 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic008G093200 Sobic008G093200 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic002G423500 Sobic002G423500 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000 Sobic003G326900 Sobic003G326900 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic010G018000--Sobic007G034400 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic001G097400 Sobic001G097400 Sobic001G235700--Sobic001G097400 Sobic001G436300 Sobic001G436300 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic001G235700--Sobic004G190600 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic006G127500 Sobic006G127500 Sobic001G235700--Sobic006G127500
Octagon: transcription factors


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