Gene annotation
Transcriptome id Sobic.003G117100.2,Sobic.003G117100.1
Synonym AtCBF5, CBF5, NAP57, Sb03g009870, AtNAP57
Functional annotation h/ACA ribonucleoprotein complex subunit 4, putative, expressed
UniProt C5XFV2 , A0A1B6Q2N5
Pfam PF01472 PF01509 PF16198 PF08068 PF01509 PF01472 PF16198 PF08068
Panther DB PTHR23127
NCBI CDD -
KEGG Orthology K11131; DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
Gene Ontology GO:0003723; RNA binding GO:0006396RNA processing GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G57150 : homologue of NAP57
RAP-DB (Rice) LOC_Os07g44190.1 : h/ACA ribonucleoprotein complex subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a040464 , Zm00025a023958 , Zm00025a035323 , Zm00025a048895
Brachypodium KQK03004 , PNT65209 , KQJ91630
Barley HORVU2Hr1G027370.1 , HORVU2Hr1G027370.3 , HORVU2Hr1G027370.2 , HORVU2Hr1G027370.5 , HORVU2Hr1G027370.4 , HORVU2Hr1G027400.2 , HORVU2Hr1G027400.5
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G477900 expressed protein -
2 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
3 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
4 Sobic.008G147500 cyclin, putative, expressed K18811: cyclin D5, plant
5 Sobic.004G082700 PPR repeat containing protein, expressed -
6 Sobic.001G493400 nucleic acid binding protein, putative, expressed -
7 Sobic.003G279800 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
8 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
9 Sobic.002G145300 ZOS7-13 - C2H2 zinc finger protein, expressed K11436: type I protein arginine methyltransferase
10 Sobic.005G012800 expressed protein -
11 Sobic.006G135000 RNA binding protein, putative, expressed K11090: LA, lupus La protein
12 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
13 Sobic.004G305700 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
14 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
15 Sobic.001G427400 AAA-type ATPase family protein, putative, expressed K11269: CTF18, chromosome transmission fidelity protein 18
16 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
17 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
18 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
19 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
20 Sobic.008G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G117100 Sobic003G117100 Sobic001G477900 Sobic001G477900 Sobic003G117100--Sobic001G477900 Sobic003G211100 Sobic003G211100 Sobic003G117100--Sobic003G211100 Sobic010G067900 Sobic010G067900 Sobic003G117100--Sobic010G067900 Sobic008G147500 Sobic008G147500 Sobic003G117100--Sobic008G147500 Sobic004G082700 Sobic004G082700 Sobic003G117100--Sobic004G082700 Sobic001G493400 Sobic001G493400 Sobic003G117100--Sobic001G493400 Sobic003G279800 Sobic003G279800 Sobic003G117100--Sobic003G279800 Sobic004G190600 Sobic004G190600 Sobic003G117100--Sobic004G190600 Sobic002G145300 Sobic002G145300 Sobic003G117100--Sobic002G145300 Sobic001G477900--Sobic003G117100 Sobic002G139200 Sobic002G139200 Sobic001G477900--Sobic002G139200 Sobic001G477900--Sobic003G211100 Sobic006G056100 Sobic006G056100 Sobic001G477900--Sobic006G056100 Sobic001G477900--Sobic004G190600 Sobic007G168400 Sobic007G168400 Sobic001G477900--Sobic007G168400 Sobic008G156900 Sobic008G156900 Sobic001G477900--Sobic008G156900 Sobic008G113800 Sobic008G113800 Sobic001G477900--Sobic008G113800 Sobic002G279300 Sobic002G279300 Sobic001G477900--Sobic002G279300 Sobic007G108100 Sobic007G108100 Sobic003G211100--Sobic007G108100 Sobic002G045100 Sobic002G045100 Sobic003G211100--Sobic002G045100 Sobic003G211100--Sobic003G117100 Sobic007G137350 Sobic007G137350 Sobic003G211100--Sobic007G137350 Sobic010G001800 Sobic010G001800 Sobic003G211100--Sobic010G001800 Sobic001G371100 Sobic001G371100 Sobic003G211100--Sobic001G371100 Sobic001G530800 Sobic001G530800 Sobic003G211100--Sobic001G530800 Sobic010G018000 Sobic010G018000 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700 Sobic002G191000 Sobic002G191000 Sobic010G067900--Sobic002G191000 Sobic010G067900--Sobic008G147500 Sobic010G147700 Sobic010G147700 Sobic010G067900--Sobic010G147700 Sobic001G029800 Sobic001G029800 Sobic010G067900--Sobic001G029800 Sobic003G118100 Sobic003G118100 Sobic010G067900--Sobic003G118100 Sobic006G029300 Sobic006G029300 Sobic010G067900--Sobic006G029300 Sobic009G087000 Sobic009G087000 Sobic010G067900--Sobic009G087000 Sobic004G271500 Sobic004G271500 Sobic010G067900--Sobic004G271500 Sobic010G103700 Sobic010G103700 Sobic010G067900--Sobic010G103700 Sobic001G427400 Sobic001G427400 Sobic008G147500--Sobic001G427400 Sobic008G147500--Sobic010G067900 Sobic003G414400 Sobic003G414400 Sobic008G147500--Sobic003G414400 Sobic001G284900 Sobic001G284900 Sobic008G147500--Sobic001G284900 Sobic004G237300 Sobic004G237300 Sobic008G147500--Sobic004G237300 Sobic004G198200 Sobic004G198200 Sobic008G147500--Sobic004G198200 Sobic008G147500--Sobic006G029300 Sobic006G112800 Sobic006G112800 Sobic008G147500--Sobic006G112800 Sobic004G271300 Sobic004G271300 Sobic008G147500--Sobic004G271300 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic003G144000 Sobic003G144000 Sobic004G082700--Sobic003G144000 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic004G082700--Sobic001G493400 Sobic001G493400--Sobic010G134100 Sobic004G002500 Sobic004G002500 Sobic001G493400--Sobic004G002500 Sobic001G214900 Sobic001G214900 Sobic001G493400--Sobic001G214900 Sobic001G493400--Sobic001G167500 Sobic001G493400--Sobic004G082700 Sobic001G493400--Sobic007G108100 Sobic006G254300 Sobic006G254300 Sobic001G493400--Sobic006G254300 Sobic001G228200 Sobic001G228200 Sobic001G493400--Sobic001G228200 Sobic001G493400--Sobic001G371100 Sobic003G279800--Sobic001G228200 Sobic005G115600 Sobic005G115600 Sobic003G279800--Sobic005G115600 Sobic004G215700 Sobic004G215700 Sobic003G279800--Sobic004G215700 Sobic006G135000 Sobic006G135000 Sobic003G279800--Sobic006G135000 Sobic008G129300 Sobic008G129300 Sobic003G279800--Sobic008G129300 Sobic009G017500 Sobic009G017500 Sobic003G279800--Sobic009G017500 Sobic007G143000 Sobic007G143000 Sobic003G279800--Sobic007G143000 Sobic003G445000 Sobic003G445000 Sobic003G279800--Sobic003G445000 Sobic002G383900 Sobic002G383900 Sobic003G279800--Sobic002G383900 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic004G190600--Sobic001G371100 Sobic010G236600 Sobic010G236600 Sobic002G145300--Sobic010G236600 Sobic001G368100 Sobic001G368100 Sobic002G145300--Sobic001G368100 Sobic001G073150 Sobic001G073150 Sobic002G145300--Sobic001G073150 Sobic005G012800 Sobic005G012800 Sobic002G145300--Sobic005G012800 Sobic002G145300--Sobic004G082700 Sobic002G152900 Sobic002G152900 Sobic002G145300--Sobic002G152900 Sobic002G145300--Sobic007G137350 Sobic006G198600 Sobic006G198600 Sobic002G145300--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic002G145300--Sobic003G123200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.