Gene annotation
Transcriptome id Sobic.001G477900.1
Synonym Sb01g044760
Functional annotation expressed protein
UniProt C5WUV9
Pfam PF11523
Panther DB PTHR33415 PTHR33415:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62440 : Protein of unknown function (DUF3223)
RAP-DB (Rice) LOC_Os03g08810.1 : expressed protein
MaizeGDB (Corn) Zm00025a000998 , Zm00025a053240
Brachypodium PNT78010 , KQK23227
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G477900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G117100 h/ACA ribonucleoprotein complex subunit 4, putative, expressed K11131: DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
2 Sobic.002G139200 transferase family protein, putative, expressed -
3 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
4 Sobic.006G056100 expressed protein -
5 Sobic.004G190600 SET, putative, expressed K11290: SET, TAF1, template-activating factor I
6 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
8 Sobic.008G113800 expressed protein -
9 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.001G330850 - -
11 Sobic.004G205300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
12 Sobic.008G147500 cyclin, putative, expressed K18811: cyclin D5, plant
13 Sobic.001G172800 RNA recognition motif containing protein, putative, expressed K09564: peptidyl-prolyl isomerase E (cyclophilin E)
14 Sobic.003G047200 expressed protein -
15 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
16 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
17 Sobic.001G070200 - -
18 Sobic.002G380600 transcription elongation factor SPT4 homolog 1, putative, expressed K15171: SUPT4H1, transcription elongation factor SPT4
19 Sobic.008G083300 expressed protein -
20 Sobic.001G331100 expressed protein -


Gene co-expression network
sample Sobic001G477900 Sobic001G477900 Sobic003G117100 Sobic003G117100 Sobic001G477900--Sobic003G117100 Sobic002G139200 Sobic002G139200 Sobic001G477900--Sobic002G139200 Sobic003G211100 Sobic003G211100 Sobic001G477900--Sobic003G211100 Sobic006G056100 Sobic006G056100 Sobic001G477900--Sobic006G056100 Sobic004G190600 Sobic004G190600 Sobic001G477900--Sobic004G190600 Sobic007G168400 Sobic007G168400 Sobic001G477900--Sobic007G168400 Sobic008G156900 Sobic008G156900 Sobic001G477900--Sobic008G156900 Sobic008G113800 Sobic008G113800 Sobic001G477900--Sobic008G113800 Sobic002G279300 Sobic002G279300 Sobic001G477900--Sobic002G279300 Sobic003G117100--Sobic001G477900 Sobic003G117100--Sobic003G211100 Sobic010G067900 Sobic010G067900 Sobic003G117100--Sobic010G067900 Sobic008G147500 Sobic008G147500 Sobic003G117100--Sobic008G147500 Sobic004G082700 Sobic004G082700 Sobic003G117100--Sobic004G082700 Sobic001G493400 Sobic001G493400 Sobic003G117100--Sobic001G493400 Sobic003G279800 Sobic003G279800 Sobic003G117100--Sobic003G279800 Sobic003G117100--Sobic004G190600 Sobic002G145300 Sobic002G145300 Sobic003G117100--Sobic002G145300 Sobic004G326000 Sobic004G326000 Sobic002G139200--Sobic004G326000 Sobic002G139200--Sobic002G279300 Sobic004G176800 Sobic004G176800 Sobic002G139200--Sobic004G176800 Sobic001G077200 Sobic001G077200 Sobic002G139200--Sobic001G077200 Sobic003G300100 Sobic003G300100 Sobic002G139200--Sobic003G300100 Sobic002G139200--Sobic007G168400 Sobic002G390600 Sobic002G390600 Sobic002G139200--Sobic002G390600 Sobic001G008400 Sobic001G008400 Sobic002G139200--Sobic001G008400 Sobic001G458900 Sobic001G458900 Sobic002G139200--Sobic001G458900 Sobic007G108100 Sobic007G108100 Sobic003G211100--Sobic007G108100 Sobic002G045100 Sobic002G045100 Sobic003G211100--Sobic002G045100 Sobic003G211100--Sobic003G117100 Sobic007G137350 Sobic007G137350 Sobic003G211100--Sobic007G137350 Sobic010G001800 Sobic010G001800 Sobic003G211100--Sobic010G001800 Sobic001G371100 Sobic001G371100 Sobic003G211100--Sobic001G371100 Sobic001G530800 Sobic001G530800 Sobic003G211100--Sobic001G530800 Sobic010G018000 Sobic010G018000 Sobic003G211100--Sobic010G018000 Sobic001G235700 Sobic001G235700 Sobic003G211100--Sobic001G235700 Sobic006G155900 Sobic006G155900 Sobic006G056100--Sobic006G155900 Sobic004G205300 Sobic004G205300 Sobic006G056100--Sobic004G205300 Sobic010G202100 Sobic010G202100 Sobic006G056100--Sobic010G202100 Sobic003G047200 Sobic003G047200 Sobic006G056100--Sobic003G047200 Sobic008G114500 Sobic008G114500 Sobic006G056100--Sobic008G114500 Sobic001G098900 Sobic001G098900 Sobic006G056100--Sobic001G098900 Sobic009G190400 Sobic009G190400 Sobic006G056100--Sobic009G190400 Sobic001G494300 Sobic001G494300 Sobic006G056100--Sobic001G494300 Sobic002G380600 Sobic002G380600 Sobic006G056100--Sobic002G380600 Sobic004G190600--Sobic001G235700 Sobic002G303800 Sobic002G303800 Sobic004G190600--Sobic002G303800 Sobic001G440900 Sobic001G440900 Sobic004G190600--Sobic001G440900 Sobic004G208100 Sobic004G208100 Sobic004G190600--Sobic004G208100 Sobic001G081700 Sobic001G081700 Sobic004G190600--Sobic001G081700 Sobic010G032700 Sobic010G032700 Sobic004G190600--Sobic010G032700 Sobic010G054600 Sobic010G054600 Sobic004G190600--Sobic010G054600 Sobic001G146900 Sobic001G146900 Sobic004G190600--Sobic001G146900 Sobic004G190600--Sobic001G371100 Sobic004G259700 Sobic004G259700 Sobic007G168400--Sobic004G259700 Sobic010G013100 Sobic010G013100 Sobic007G168400--Sobic010G013100 Sobic001G416900 Sobic001G416900 Sobic007G168400--Sobic001G416900 Sobic004G099500 Sobic004G099500 Sobic007G168400--Sobic004G099500 Sobic009G167500 Sobic009G167500 Sobic007G168400--Sobic009G167500 Sobic002G276000 Sobic002G276000 Sobic007G168400--Sobic002G276000 Sobic003G057600 Sobic003G057600 Sobic007G168400--Sobic003G057600 Sobic001G054800 Sobic001G054800 Sobic007G168400--Sobic001G054800 Sobic001G009700 Sobic001G009700 Sobic007G168400--Sobic001G009700 Sobic008G156900--Sobic003G300100 Sobic001G451800 Sobic001G451800 Sobic008G156900--Sobic001G451800 Sobic007G113900 Sobic007G113900 Sobic008G156900--Sobic007G113900 Sobic001G253900 Sobic001G253900 Sobic008G156900--Sobic001G253900 Sobic001G397700 Sobic001G397700 Sobic008G156900--Sobic001G397700 Sobic008G156900--Sobic002G279300 Sobic001G331100 Sobic001G331100 Sobic008G156900--Sobic001G331100 Sobic010G234800 Sobic010G234800 Sobic008G156900--Sobic010G234800 Sobic001G496700 Sobic001G496700 Sobic008G156900--Sobic001G496700 Sobic001G403200 Sobic001G403200 Sobic008G113800--Sobic001G403200 Sobic004G271500 Sobic004G271500 Sobic008G113800--Sobic004G271500 Sobic010G274000 Sobic010G274000 Sobic008G113800--Sobic010G274000 Sobic003G041700 Sobic003G041700 Sobic008G113800--Sobic003G041700 Sobic002G191000 Sobic002G191000 Sobic008G113800--Sobic002G191000 Sobic001G103000 Sobic001G103000 Sobic008G113800--Sobic001G103000 Sobic009G088200 Sobic009G088200 Sobic008G113800--Sobic009G088200 Sobic007G152900 Sobic007G152900 Sobic008G113800--Sobic007G152900 Sobic003G420100 Sobic003G420100 Sobic008G113800--Sobic003G420100 Sobic004G115600 Sobic004G115600 Sobic002G279300--Sobic004G115600 Sobic002G279300--Sobic001G458900 Sobic002G279300--Sobic001G331100 Sobic002G279300--Sobic003G047200 Sobic002G279300--Sobic003G300100 Sobic002G293800 Sobic002G293800 Sobic002G279300--Sobic002G293800 Sobic002G279300--Sobic001G098900 Sobic002G279300--Sobic001G077200 Sobic002G279300--Sobic010G234800
Octagon: transcription factors


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