Gene annotation
Transcriptome id Sobic.008G156900.1
Synonym IAA16,auxin/indole-3-acetic acid (Aux/IAA), SbIAA17, Sb08g020580
Functional annotation similar to Auxin-responsive protein IAA30 (PubMedID : 29862293)
"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf" (PubMedID : 20499123)
OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5YRE2
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF30
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G04730 : indoleacetic acid-induced protein 16
RAP-DB (Rice) LOC_Os12g40890.1 : OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a042258 , Zm00025a047770 , Zm00025a025289 , Zm00025a030301
Brachypodium KQK02999 , KQK07226 , KQK17820 , KQK07228 , KQK13275 , KQJ91157 , KQK07227 , KQK14081 , KQK14082 , KQK14083 , KQJ85960 , KQJ85961
Barley HORVU3Hr1G031460.10 , HORVU1Hr1G025670.5 , HORVU1Hr1G025670.4 , HORVU1Hr1G025670.7 , HORVU1Hr1G025670.1 , HORVU1Hr1G025670.3 , HORVU1Hr1G025670.2 , HORVU1Hr1G025670.9 , HORVU1Hr1G025670.8 , HORVU3Hr1G031460.8 , HORVU5Hr1G014300.5 , HORVU5Hr1G014300.4 , HORVU5Hr1G014300.6 , HORVU5Hr1G014300.1 , HORVU5Hr1G014300.3 , HORVU5Hr1G014300.2 , HORVU5Hr1G081180.1 , HORVU1Hr1G025670.6 , HORVU5Hr1G093580.6 , HORVU5Hr1G093580.7 , HORVU5Hr1G093580.4 , HORVU5Hr1G093580.5 , HORVU5Hr1G093580.2 , HORVU5Hr1G093580.3 , HORVU5Hr1G093580.8 , HORVU3Hr1G031460.6 , HORVU3Hr1G031460.4 , HORVU3Hr1G031460.3 , HORVU3Hr1G031460.2 , HORVU3Hr1G031460.1
Wheat TraesCS3D02G123400 , TraesCS5D02G323500 , TraesCS5A02G317200 , TraesCS5B02G058500 , TraesCS3A02G121300 , TraesCS3A02G121300 , TraesCS5D02G069300 , TraesCS5D02G388300 , TraesCS5D02G388300 , TraesCS5B02G381900 , TraesCS1D02G119500 , TraesCS3D02G162700 , TraesCS3B02G181500 , TraesCS1B02G138100 , TraesCS5B02G317800 , TraesCS5A02G058600 , TraesCS5A02G378300 , TraesCS5A02G378300 , TraesCS3B02G140700 , TraesCS1A02G118400 , TraesCS1A02G118400
Populus PNT38023 , PNT38022


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
2 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
3 Sobic.007G113900 reticulon domain containing protein, putative, expressed -
4 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.001G397700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
6 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.001G331100 expressed protein -
8 Sobic.010G234800 expressed protein -
9 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -
10 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
11 Sobic.003G047200 expressed protein -
12 Sobic.001G458900 targeting protein-related, putative, expressed -
13 Sobic.001G026700 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
14 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
15 Sobic.002G390600 sec20 domain containing protein, expressed K08494: novel plant SNARE
16 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
18 Sobic.002G293800 expressed protein -
19 Sobic.008G083300 expressed protein -
20 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -


Gene co-expression network
sample Sobic008G156900 Sobic008G156900 Sobic003G300100 Sobic003G300100 Sobic008G156900--Sobic003G300100 Sobic001G451800 Sobic001G451800 Sobic008G156900--Sobic001G451800 Sobic007G113900 Sobic007G113900 Sobic008G156900--Sobic007G113900 Sobic001G253900 Sobic001G253900 Sobic008G156900--Sobic001G253900 Sobic001G397700 Sobic001G397700 Sobic008G156900--Sobic001G397700 Sobic002G279300 Sobic002G279300 Sobic008G156900--Sobic002G279300 Sobic001G331100 Sobic001G331100 Sobic008G156900--Sobic001G331100 Sobic010G234800 Sobic010G234800 Sobic008G156900--Sobic010G234800 Sobic001G496700 Sobic001G496700 Sobic008G156900--Sobic001G496700 Sobic003G300100--Sobic002G279300 Sobic003G300100--Sobic008G156900 Sobic003G300100--Sobic001G397700 Sobic004G115600 Sobic004G115600 Sobic003G300100--Sobic004G115600 Sobic003G300100--Sobic001G331100 Sobic003G300100--Sobic001G253900 Sobic001G458900 Sobic001G458900 Sobic003G300100--Sobic001G458900 Sobic008G083300 Sobic008G083300 Sobic003G300100--Sobic008G083300 Sobic003G300100--Sobic001G451800 Sobic001G451800--Sobic001G253900 Sobic003G400600 Sobic003G400600 Sobic001G451800--Sobic003G400600 Sobic001G451800--Sobic007G113900 Sobic003G420100 Sobic003G420100 Sobic001G451800--Sobic003G420100 Sobic001G451800--Sobic008G156900 Sobic003G277200 Sobic003G277200 Sobic001G451800--Sobic003G277200 Sobic010G104400 Sobic010G104400 Sobic001G451800--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic001G451800--Sobic006G214000 Sobic010G181500 Sobic010G181500 Sobic001G451800--Sobic010G181500 Sobic007G113900--Sobic001G253900 Sobic007G113900--Sobic001G451800 Sobic007G113900--Sobic008G156900 Sobic010G234900 Sobic010G234900 Sobic007G113900--Sobic010G234900 Sobic002G202500 Sobic002G202500 Sobic007G113900--Sobic002G202500 Sobic007G162000 Sobic007G162000 Sobic007G113900--Sobic007G162000 Sobic006G178800 Sobic006G178800 Sobic007G113900--Sobic006G178800 Sobic007G113900--Sobic001G331100 Sobic009G134000 Sobic009G134000 Sobic007G113900--Sobic009G134000 Sobic001G253900--Sobic001G451800 Sobic001G253900--Sobic007G162000 Sobic001G253900--Sobic007G113900 Sobic001G253900--Sobic008G156900 Sobic001G253900--Sobic003G300100 Sobic004G288500 Sobic004G288500 Sobic001G253900--Sobic004G288500 Sobic001G253900--Sobic009G134000 Sobic001G253900--Sobic002G202500 Sobic001G253900--Sobic008G083300 Sobic001G397700--Sobic003G300100 Sobic001G397700--Sobic008G156900 Sobic004G107900 Sobic004G107900 Sobic001G397700--Sobic004G107900 Sobic001G409700 Sobic001G409700 Sobic001G397700--Sobic001G409700 Sobic001G098900 Sobic001G098900 Sobic001G397700--Sobic001G098900 Sobic004G133000 Sobic004G133000 Sobic001G397700--Sobic004G133000 Sobic001G026700 Sobic001G026700 Sobic001G397700--Sobic001G026700 Sobic001G244400 Sobic001G244400 Sobic001G397700--Sobic001G244400 Sobic010G215300 Sobic010G215300 Sobic001G397700--Sobic010G215300 Sobic002G279300--Sobic004G115600 Sobic002G279300--Sobic001G458900 Sobic002G279300--Sobic001G331100 Sobic003G047200 Sobic003G047200 Sobic002G279300--Sobic003G047200 Sobic002G279300--Sobic003G300100 Sobic002G293800 Sobic002G293800 Sobic002G279300--Sobic002G293800 Sobic002G279300--Sobic001G098900 Sobic001G077200 Sobic001G077200 Sobic002G279300--Sobic001G077200 Sobic002G279300--Sobic010G234800 Sobic001G331100--Sobic004G115600 Sobic006G108000 Sobic006G108000 Sobic001G331100--Sobic006G108000 Sobic001G331100--Sobic002G279300 Sobic009G254400 Sobic009G254400 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic008G163800 Sobic008G163800 Sobic001G331100--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G202100 Sobic010G202100 Sobic010G234800--Sobic010G202100 Sobic010G234800--Sobic003G047200 Sobic008G114500 Sobic008G114500 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic007G017700 Sobic007G017700 Sobic010G234800--Sobic007G017700 Sobic003G414400 Sobic003G414400 Sobic010G234800--Sobic003G414400 Sobic001G140600 Sobic001G140600 Sobic010G234800--Sobic001G140600 Sobic001G496700--Sobic001G098900 Sobic001G496700--Sobic010G234800 Sobic001G496700--Sobic010G202100 Sobic001G496700--Sobic008G114500 Sobic001G496700--Sobic008G156900 Sobic009G190400 Sobic009G190400 Sobic001G496700--Sobic009G190400 Sobic009G195600 Sobic009G195600 Sobic001G496700--Sobic009G195600 Sobic001G496700--Sobic010G215300 Sobic003G282600 Sobic003G282600 Sobic001G496700--Sobic003G282600
Octagon: transcription factors


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