Gene annotation
Transcriptome id Sobic.007G113900.1
Synonym Sb07g018020
Functional annotation reticulon domain containing protein, putative, expressed
UniProt A0A1B6PHB2
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58000 : Reticulon family protein
RAP-DB (Rice) LOC_Os08g17870.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a030829
Brachypodium KQJ95918 , KQJ95919
Barley HORVU3Hr1G032090.9 , HORVU3Hr1G032090.8 , HORVU3Hr1G032090.7 , HORVU3Hr1G032090.6 , HORVU3Hr1G032090.4 , HORVU3Hr1G032090.3 , HORVU3Hr1G032090.2 , HORVU3Hr1G032090.1 , HORVU3Hr1G032090.15 , HORVU3Hr1G032090.17 , HORVU3Hr1G032090.16 , HORVU3Hr1G032090.14 , HORVU3Hr1G032090.13 , HORVU3Hr1G032090.12 , HORVU3Hr1G032090.11 , HORVU3Hr1G032090.10
Wheat TraesCS3B02G184900 , TraesCS3B02G184900 , TraesCS3D02G165500 , TraesCS3A02G157900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
2 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
3 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.010G234900 armadillo/beta-catenin repeat family protein, putative, expressed -
5 Sobic.002G202500 spotted leaf 11, putative, expressed -
6 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
7 Sobic.006G178800 DUF630/DUF632 domains containing protein, putative, expressed -
8 Sobic.001G331100 expressed protein -
9 Sobic.009G134000 receptor-like protein kinase precursor, putative, expressed -
10 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
11 Sobic.003G031400 harpin-induced protein 1 domain containing protein, expressed -
12 Sobic.003G400600 BHLH transcription factor, putative, expressed -
13 Sobic.010G143300 carboxyl-terminal peptidase, putative, expressed -
14 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -
15 Sobic.003G432000 expressed protein -
16 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
17 Sobic.008G145300 BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
18 Sobic.009G203200 pectinesterase, putative, expressed K01051: pectinesterase
19 Sobic.004G113900 polygalacturonase, putative, expressed -
20 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic007G113900 Sobic007G113900 Sobic001G253900 Sobic001G253900 Sobic007G113900--Sobic001G253900 Sobic001G451800 Sobic001G451800 Sobic007G113900--Sobic001G451800 Sobic008G156900 Sobic008G156900 Sobic007G113900--Sobic008G156900 Sobic010G234900 Sobic010G234900 Sobic007G113900--Sobic010G234900 Sobic002G202500 Sobic002G202500 Sobic007G113900--Sobic002G202500 Sobic007G162000 Sobic007G162000 Sobic007G113900--Sobic007G162000 Sobic006G178800 Sobic006G178800 Sobic007G113900--Sobic006G178800 Sobic001G331100 Sobic001G331100 Sobic007G113900--Sobic001G331100 Sobic009G134000 Sobic009G134000 Sobic007G113900--Sobic009G134000 Sobic001G253900--Sobic001G451800 Sobic001G253900--Sobic007G162000 Sobic001G253900--Sobic007G113900 Sobic001G253900--Sobic008G156900 Sobic003G300100 Sobic003G300100 Sobic001G253900--Sobic003G300100 Sobic004G288500 Sobic004G288500 Sobic001G253900--Sobic004G288500 Sobic001G253900--Sobic009G134000 Sobic001G253900--Sobic002G202500 Sobic008G083300 Sobic008G083300 Sobic001G253900--Sobic008G083300 Sobic001G451800--Sobic001G253900 Sobic003G400600 Sobic003G400600 Sobic001G451800--Sobic003G400600 Sobic001G451800--Sobic007G113900 Sobic003G420100 Sobic003G420100 Sobic001G451800--Sobic003G420100 Sobic001G451800--Sobic008G156900 Sobic003G277200 Sobic003G277200 Sobic001G451800--Sobic003G277200 Sobic010G104400 Sobic010G104400 Sobic001G451800--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic001G451800--Sobic006G214000 Sobic010G181500 Sobic010G181500 Sobic001G451800--Sobic010G181500 Sobic008G156900--Sobic003G300100 Sobic008G156900--Sobic001G451800 Sobic008G156900--Sobic007G113900 Sobic008G156900--Sobic001G253900 Sobic001G397700 Sobic001G397700 Sobic008G156900--Sobic001G397700 Sobic002G279300 Sobic002G279300 Sobic008G156900--Sobic002G279300 Sobic008G156900--Sobic001G331100 Sobic010G234800 Sobic010G234800 Sobic008G156900--Sobic010G234800 Sobic001G496700 Sobic001G496700 Sobic008G156900--Sobic001G496700 Sobic003G432000 Sobic003G432000 Sobic010G234900--Sobic003G432000 Sobic010G209800 Sobic010G209800 Sobic010G234900--Sobic010G209800 Sobic005G129600 Sobic005G129600 Sobic010G234900--Sobic005G129600 Sobic007G038000 Sobic007G038000 Sobic010G234900--Sobic007G038000 Sobic010G234900--Sobic007G113900 Sobic004G133000 Sobic004G133000 Sobic010G234900--Sobic004G133000 Sobic010G234900--Sobic002G202500 Sobic006G176400 Sobic006G176400 Sobic010G234900--Sobic006G176400 Sobic004G113900 Sobic004G113900 Sobic010G234900--Sobic004G113900 Sobic002G202500--Sobic007G162000 Sobic004G336700 Sobic004G336700 Sobic002G202500--Sobic004G336700 Sobic001G247700 Sobic001G247700 Sobic002G202500--Sobic001G247700 Sobic009G195600 Sobic009G195600 Sobic002G202500--Sobic009G195600 Sobic001G265300 Sobic001G265300 Sobic002G202500--Sobic001G265300 Sobic002G202500--Sobic004G113900 Sobic007G019600 Sobic007G019600 Sobic002G202500--Sobic007G019600 Sobic002G202500--Sobic010G209800 Sobic004G283800 Sobic004G283800 Sobic002G202500--Sobic004G283800 Sobic007G162000--Sobic002G202500 Sobic007G162000--Sobic009G195600 Sobic007G162000--Sobic007G019600 Sobic003G047200 Sobic003G047200 Sobic007G162000--Sobic003G047200 Sobic007G162000--Sobic001G331100 Sobic002G035500 Sobic002G035500 Sobic007G162000--Sobic002G035500 Sobic007G162000--Sobic001G253900 Sobic006G155900 Sobic006G155900 Sobic007G162000--Sobic006G155900 Sobic007G162000--Sobic003G432000 Sobic006G178800--Sobic009G134000 Sobic010G143300 Sobic010G143300 Sobic006G178800--Sobic010G143300 Sobic003G333000 Sobic003G333000 Sobic006G178800--Sobic003G333000 Sobic006G178800--Sobic007G113900 Sobic002G396200 Sobic002G396200 Sobic006G178800--Sobic002G396200 Sobic002G142500 Sobic002G142500 Sobic006G178800--Sobic002G142500 Sobic010G207700 Sobic010G207700 Sobic006G178800--Sobic010G207700 Sobic004G044100 Sobic004G044100 Sobic006G178800--Sobic004G044100 Sobic005G227050 Sobic005G227050 Sobic006G178800--Sobic005G227050 Sobic004G115600 Sobic004G115600 Sobic001G331100--Sobic004G115600 Sobic006G108000 Sobic006G108000 Sobic001G331100--Sobic006G108000 Sobic001G331100--Sobic002G279300 Sobic009G254400 Sobic009G254400 Sobic001G331100--Sobic009G254400 Sobic001G331100--Sobic006G155900 Sobic008G163800 Sobic008G163800 Sobic001G331100--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic007G012800 Sobic007G012800 Sobic009G134000--Sobic007G012800 Sobic009G134000--Sobic010G143300 Sobic009G154100 Sobic009G154100 Sobic009G134000--Sobic009G154100 Sobic009G134000--Sobic003G277200 Sobic009G134000--Sobic006G178800 Sobic010G107200 Sobic010G107200 Sobic009G134000--Sobic010G107200 Sobic001G389600 Sobic001G389600 Sobic009G134000--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic009G134000--Sobic001G478100 Sobic005G130700 Sobic005G130700 Sobic009G134000--Sobic005G130700
Octagon: transcription factors


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