Gene annotation
Transcriptome id Sobic.002G390600.1
Synonym ATNPSN13, NPSN13, Sb02g040620
Functional annotation sec20 domain containing protein, expressed
UniProt C5X3B5
Pfam PF03908
Panther DB PTHR21230 PTHR21230:SF35
NCBI CDD KOG1666; V-SNARE
KEGG Orthology K08494; novel plant SNARE
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G17440 : novel plant snare 13
RAP-DB (Rice) LOC_Os07g44350.1 : sec20 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048917 , Zm00025a015277
Brachypodium KQK15003
Barley HORVU2Hr1G026870.1 , HORVU2Hr1G026870.3 , HORVU2Hr1G026870.2 , HORVU2Hr1G026870.5 , HORVU2Hr1G026870.4 , HORVU2Hr1G026870.7 , HORVU2Hr1G026870.6 , HORVU1Hr1G069840.9 , HORVU1Hr1G069840.3 , HORVU1Hr1G069840.10 , HORVU1Hr1G069840.11 , HORVU1Hr1G069840.12 , HORVU1Hr1G069840.13
Wheat TraesCS2B02G174800 , TraesCS2D02G154800 , TraesCS2A02G149700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G133000 - -
2 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.001G397700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
4 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.002G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
6 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -
7 Sobic.004G189600 phosphopantothenate--cysteine ligase, putative, expressed K01922: PPCS, phosphopantothenate---cysteine ligase (ATP)
8 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.004G107900 bZIP transcription factor family protein, putative, expressed -
10 Sobic.002G139200 transferase family protein, putative, expressed -
11 Sobic.009G123000 expressed protein -
12 Sobic.001G331100 expressed protein -
13 Sobic.004G326000 RING-H2 finger protein, putative, expressed -
14 Sobic.003G057366 - K11254: histone H4
15 Sobic.003G286400 DUF623 domain containing protein, expressed -
16 Sobic.001G096900 BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
17 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
18 Sobic.001G080600 expressed protein -
19 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
20 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G390600 Sobic002G390600 Sobic004G133000 Sobic004G133000 Sobic002G390600--Sobic004G133000 Sobic009G167500 Sobic009G167500 Sobic002G390600--Sobic009G167500 Sobic001G397700 Sobic001G397700 Sobic002G390600--Sobic001G397700 Sobic006G003000 Sobic006G003000 Sobic002G390600--Sobic006G003000 Sobic002G005400 Sobic002G005400 Sobic002G390600--Sobic002G005400 Sobic001G496700 Sobic001G496700 Sobic002G390600--Sobic001G496700 Sobic004G189600 Sobic004G189600 Sobic002G390600--Sobic004G189600 Sobic008G156900 Sobic008G156900 Sobic002G390600--Sobic008G156900 Sobic004G107900 Sobic004G107900 Sobic002G390600--Sobic004G107900 Sobic006G176400 Sobic006G176400 Sobic004G133000--Sobic006G176400 Sobic001G070200 Sobic001G070200 Sobic004G133000--Sobic001G070200 Sobic003G286400 Sobic003G286400 Sobic004G133000--Sobic003G286400 Sobic004G133000--Sobic002G390600 Sobic009G081400 Sobic009G081400 Sobic004G133000--Sobic009G081400 Sobic010G234900 Sobic010G234900 Sobic004G133000--Sobic010G234900 Sobic004G133000--Sobic001G397700 Sobic004G198200 Sobic004G198200 Sobic004G133000--Sobic004G198200 Sobic004G133000--Sobic004G107900 Sobic001G009700 Sobic001G009700 Sobic009G167500--Sobic001G009700 Sobic003G057366 Sobic003G057366 Sobic009G167500--Sobic003G057366 Sobic001G416900 Sobic001G416900 Sobic009G167500--Sobic001G416900 Sobic004G259700 Sobic004G259700 Sobic009G167500--Sobic004G259700 Sobic002G276000 Sobic002G276000 Sobic009G167500--Sobic002G276000 Sobic010G013100 Sobic010G013100 Sobic009G167500--Sobic010G013100 Sobic003G057100 Sobic003G057100 Sobic009G167500--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic009G167500--Sobic001G054800 Sobic003G127600 Sobic003G127600 Sobic009G167500--Sobic003G127600 Sobic003G300100 Sobic003G300100 Sobic001G397700--Sobic003G300100 Sobic001G397700--Sobic008G156900 Sobic001G397700--Sobic004G107900 Sobic001G409700 Sobic001G409700 Sobic001G397700--Sobic001G409700 Sobic001G098900 Sobic001G098900 Sobic001G397700--Sobic001G098900 Sobic001G397700--Sobic004G133000 Sobic001G026700 Sobic001G026700 Sobic001G397700--Sobic001G026700 Sobic001G244400 Sobic001G244400 Sobic001G397700--Sobic001G244400 Sobic010G215300 Sobic010G215300 Sobic001G397700--Sobic010G215300 Sobic009G123000 Sobic009G123000 Sobic006G003000--Sobic009G123000 Sobic005G198300 Sobic005G198300 Sobic006G003000--Sobic005G198300 Sobic010G194500 Sobic010G194500 Sobic006G003000--Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic006G003000--Sobic001G005000 Sobic006G018900 Sobic006G018900 Sobic006G003000--Sobic006G018900 Sobic001G148600 Sobic001G148600 Sobic006G003000--Sobic001G148600 Sobic001G239400 Sobic001G239400 Sobic006G003000--Sobic001G239400 Sobic010G014300 Sobic010G014300 Sobic006G003000--Sobic010G014300 Sobic010G161300 Sobic010G161300 Sobic006G003000--Sobic010G161300 Sobic003G057600 Sobic003G057600 Sobic002G005400--Sobic003G057600 Sobic002G005400--Sobic003G057366 Sobic006G257100 Sobic006G257100 Sobic002G005400--Sobic006G257100 Sobic002G005400--Sobic009G123000 Sobic007G172300 Sobic007G172300 Sobic002G005400--Sobic007G172300 Sobic003G395500 Sobic003G395500 Sobic002G005400--Sobic003G395500 Sobic002G050400 Sobic002G050400 Sobic002G005400--Sobic002G050400 Sobic006G166700 Sobic006G166700 Sobic002G005400--Sobic006G166700 Sobic004G099500 Sobic004G099500 Sobic002G005400--Sobic004G099500 Sobic001G496700--Sobic001G098900 Sobic010G234800 Sobic010G234800 Sobic001G496700--Sobic010G234800 Sobic010G202100 Sobic010G202100 Sobic001G496700--Sobic010G202100 Sobic008G114500 Sobic008G114500 Sobic001G496700--Sobic008G114500 Sobic001G496700--Sobic008G156900 Sobic009G190400 Sobic009G190400 Sobic001G496700--Sobic009G190400 Sobic009G195600 Sobic009G195600 Sobic001G496700--Sobic009G195600 Sobic001G496700--Sobic010G215300 Sobic003G282600 Sobic003G282600 Sobic001G496700--Sobic003G282600 Sobic004G189600--Sobic004G133000 Sobic004G189600--Sobic002G390600 Sobic004G189600--Sobic003G286400 Sobic004G189600--Sobic010G014300 Sobic001G096900 Sobic001G096900 Sobic004G189600--Sobic001G096900 Sobic002G282100 Sobic002G282100 Sobic004G189600--Sobic002G282100 Sobic004G288400 Sobic004G288400 Sobic004G189600--Sobic004G288400 Sobic006G177100 Sobic006G177100 Sobic004G189600--Sobic006G177100 Sobic009G136600 Sobic009G136600 Sobic004G189600--Sobic009G136600 Sobic008G156900--Sobic003G300100 Sobic001G451800 Sobic001G451800 Sobic008G156900--Sobic001G451800 Sobic007G113900 Sobic007G113900 Sobic008G156900--Sobic007G113900 Sobic001G253900 Sobic001G253900 Sobic008G156900--Sobic001G253900 Sobic008G156900--Sobic001G397700 Sobic002G279300 Sobic002G279300 Sobic008G156900--Sobic002G279300 Sobic001G331100 Sobic001G331100 Sobic008G156900--Sobic001G331100 Sobic008G156900--Sobic010G234800 Sobic008G156900--Sobic001G496700 Sobic004G107900--Sobic006G018900 Sobic001G462100 Sobic001G462100 Sobic004G107900--Sobic001G462100 Sobic004G107900--Sobic001G005000 Sobic004G249700 Sobic004G249700 Sobic004G107900--Sobic004G249700 Sobic004G107900--Sobic010G014300 Sobic004G107900--Sobic001G397700 Sobic004G107900--Sobic001G239400 Sobic004G107900--Sobic006G166700 Sobic004G300600 Sobic004G300600 Sobic004G107900--Sobic004G300600
Octagon: transcription factors


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