Gene annotation
Transcriptome id Sobic.001G096900.1
Synonym Sb01g008670
Functional annotation BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1Z5S5E0
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66560 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os03g52880.1 : BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a008065 , Zm00025a009620 , Zm00025a027282
Brachypodium KQK13013 , KQK10073 , PNT61555 , PNT61947 , KQK13304 , KQK13308 , PNT61948 , PNT61949
Barley HORVU5Hr1G093880.3 , HORVU5Hr1G093880.2 , HORVU5Hr1G093880.1 , HORVU5Hr1G093850.4 , HORVU5Hr1G093850.5 , HORVU5Hr1G093850.6 , HORVU5Hr1G093850.7 , HORVU5Hr1G093850.1 , HORVU5Hr1G093850.2 , HORVU5Hr1G093850.3 , HORVU5Hr1G093850.8 , HORVU5Hr1G093850.9 , HORVU7Hr1G097110.7 , HORVU7Hr1G097110.6 , HORVU7Hr1G097110.5 , HORVU3Hr1G076740.2 , HORVU3Hr1G076740.1 , HORVU5Hr1G093850.16 , HORVU5Hr1G093850.17 , HORVU5Hr1G093850.14 , HORVU5Hr1G093850.15 , HORVU5Hr1G093850.12 , HORVU5Hr1G093850.13 , HORVU5Hr1G093850.10 , HORVU5Hr1G093850.11 , HORVU5Hr1G093850.18 , HORVU5Hr1G093850.19
Wheat TraesCS5A02G403400 , TraesCS5A02G403400 , TraesCS1B02G298700 , TraesCS2B02G557300 , TraesCS2B02G557300 , TraesCS5D02G389200 , TraesCS5D02G389200 , TraesCS2A02G526900 , TraesCS5B02G383100 , TraesCS3A02G317300 , TraesCS2D02G529600 , TraesCS5D02G413400 , TraesCS5D02G413400 , TraesCS2D02G507400 , TraesCS3B02G349200 , TraesCS5A02G379300 , TraesCS5B02G408200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G238100 plant-specific domain TIGR01627 family protein, expressed -
2 Sobic.002G390600 sec20 domain containing protein, expressed K08494: novel plant SNARE
3 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -
4 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
5 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
6 Sobic.004G189600 phosphopantothenate--cysteine ligase, putative, expressed K01922: PPCS, phosphopantothenate---cysteine ligase (ATP)
7 Sobic.003G187100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
10 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G057366 - K11254: histone H4
12 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
13 Sobic.002G291066 - K11254: histone H4
14 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
16 Sobic.001G172800 RNA recognition motif containing protein, putative, expressed K09564: peptidyl-prolyl isomerase E (cyclophilin E)
17 Sobic.009G155500 cytochrome P450, putative, expressed -
18 Sobic.001G170700 OsSub30 - Putative Subtilisin homologue, expressed -
19 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
20 Sobic.010G013100 expressed protein -


Gene co-expression network
sample Sobic001G096900 Sobic001G096900 Sobic010G238100 Sobic010G238100 Sobic001G096900--Sobic010G238100 Sobic002G390600 Sobic002G390600 Sobic001G096900--Sobic002G390600 Sobic001G496700 Sobic001G496700 Sobic001G096900--Sobic001G496700 Sobic001G054800 Sobic001G054800 Sobic001G096900--Sobic001G054800 Sobic009G167500 Sobic009G167500 Sobic001G096900--Sobic009G167500 Sobic004G189600 Sobic004G189600 Sobic001G096900--Sobic004G189600 Sobic003G187100 Sobic003G187100 Sobic001G096900--Sobic003G187100 Sobic008G156900 Sobic008G156900 Sobic001G096900--Sobic008G156900 Sobic001G009700 Sobic001G009700 Sobic001G096900--Sobic001G009700 Sobic001G533000 Sobic001G533000 Sobic010G238100--Sobic001G533000 Sobic010G238100--Sobic001G054800 Sobic002G291066 Sobic002G291066 Sobic010G238100--Sobic002G291066 Sobic003G338966 Sobic003G338966 Sobic010G238100--Sobic003G338966 Sobic010G238100--Sobic001G096900 Sobic001G529400 Sobic001G529400 Sobic010G238100--Sobic001G529400 Sobic010G238100--Sobic009G167500 Sobic010G176900 Sobic010G176900 Sobic010G238100--Sobic010G176900 Sobic007G198000 Sobic007G198000 Sobic010G238100--Sobic007G198000 Sobic004G133000 Sobic004G133000 Sobic002G390600--Sobic004G133000 Sobic002G390600--Sobic009G167500 Sobic001G397700 Sobic001G397700 Sobic002G390600--Sobic001G397700 Sobic006G003000 Sobic006G003000 Sobic002G390600--Sobic006G003000 Sobic002G005400 Sobic002G005400 Sobic002G390600--Sobic002G005400 Sobic002G390600--Sobic001G496700 Sobic002G390600--Sobic004G189600 Sobic002G390600--Sobic008G156900 Sobic004G107900 Sobic004G107900 Sobic002G390600--Sobic004G107900 Sobic001G098900 Sobic001G098900 Sobic001G496700--Sobic001G098900 Sobic010G234800 Sobic010G234800 Sobic001G496700--Sobic010G234800 Sobic010G202100 Sobic010G202100 Sobic001G496700--Sobic010G202100 Sobic008G114500 Sobic008G114500 Sobic001G496700--Sobic008G114500 Sobic001G496700--Sobic008G156900 Sobic009G190400 Sobic009G190400 Sobic001G496700--Sobic009G190400 Sobic009G195600 Sobic009G195600 Sobic001G496700--Sobic009G195600 Sobic010G215300 Sobic010G215300 Sobic001G496700--Sobic010G215300 Sobic003G282600 Sobic003G282600 Sobic001G496700--Sobic003G282600 Sobic002G276000 Sobic002G276000 Sobic001G054800--Sobic002G276000 Sobic003G057100 Sobic003G057100 Sobic001G054800--Sobic003G057100 Sobic001G054800--Sobic002G291066 Sobic001G054800--Sobic007G198000 Sobic001G054800--Sobic001G009700 Sobic001G054800--Sobic001G529400 Sobic003G347900 Sobic003G347900 Sobic001G054800--Sobic003G347900 Sobic001G054800--Sobic009G167500 Sobic010G047100 Sobic010G047100 Sobic001G054800--Sobic010G047100 Sobic009G167500--Sobic001G009700 Sobic003G057366 Sobic003G057366 Sobic009G167500--Sobic003G057366 Sobic001G416900 Sobic001G416900 Sobic009G167500--Sobic001G416900 Sobic004G259700 Sobic004G259700 Sobic009G167500--Sobic004G259700 Sobic009G167500--Sobic002G276000 Sobic010G013100 Sobic010G013100 Sobic009G167500--Sobic010G013100 Sobic009G167500--Sobic003G057100 Sobic009G167500--Sobic001G054800 Sobic003G127600 Sobic003G127600 Sobic009G167500--Sobic003G127600 Sobic004G189600--Sobic004G133000 Sobic004G189600--Sobic002G390600 Sobic003G286400 Sobic003G286400 Sobic004G189600--Sobic003G286400 Sobic010G014300 Sobic010G014300 Sobic004G189600--Sobic010G014300 Sobic004G189600--Sobic001G096900 Sobic002G282100 Sobic002G282100 Sobic004G189600--Sobic002G282100 Sobic004G288400 Sobic004G288400 Sobic004G189600--Sobic004G288400 Sobic006G177100 Sobic006G177100 Sobic004G189600--Sobic006G177100 Sobic009G136600 Sobic009G136600 Sobic004G189600--Sobic009G136600 Sobic007G172300 Sobic007G172300 Sobic003G187100--Sobic007G172300 Sobic003G395500 Sobic003G395500 Sobic003G187100--Sobic003G395500 Sobic003G187100--Sobic004G259700 Sobic003G187100--Sobic009G167500 Sobic009G015000 Sobic009G015000 Sobic003G187100--Sobic009G015000 Sobic003G187100--Sobic003G057366 Sobic001G041000 Sobic001G041000 Sobic003G187100--Sobic001G041000 Sobic004G128000 Sobic004G128000 Sobic003G187100--Sobic004G128000 Sobic004G099500 Sobic004G099500 Sobic003G187100--Sobic004G099500 Sobic003G300100 Sobic003G300100 Sobic008G156900--Sobic003G300100 Sobic001G451800 Sobic001G451800 Sobic008G156900--Sobic001G451800 Sobic007G113900 Sobic007G113900 Sobic008G156900--Sobic007G113900 Sobic001G253900 Sobic001G253900 Sobic008G156900--Sobic001G253900 Sobic008G156900--Sobic001G397700 Sobic002G279300 Sobic002G279300 Sobic008G156900--Sobic002G279300 Sobic001G331100 Sobic001G331100 Sobic008G156900--Sobic001G331100 Sobic008G156900--Sobic010G234800 Sobic008G156900--Sobic001G496700 Sobic001G009700--Sobic009G167500 Sobic001G009700--Sobic002G276000 Sobic001G009700--Sobic001G054800 Sobic001G009700--Sobic003G057100 Sobic002G210500 Sobic002G210500 Sobic001G009700--Sobic002G210500 Sobic001G009700--Sobic003G057366 Sobic001G009700--Sobic010G013100 Sobic001G009700--Sobic004G099500 Sobic001G009700--Sobic003G338966
Octagon: transcription factors


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