Gene annotation
Transcriptome id Sobic.004G189600.1
Synonym Sb04g023780, ATCOAB, COAB
Functional annotation phosphopantothenate--cysteine ligase, putative, expressed
UniProt C5XVP2
Pfam PF04127
Panther DB PTHR12290 PTHR12290:SF17
NCBI CDD KOG2728; Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase
KEGG Orthology K01922; PPCS, phosphopantothenate---cysteine ligase (ATP)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12350 : 4-phospho-panto-thenoylcysteine synthetase
RAP-DB (Rice) LOC_Os02g36550.1 : phosphopantothenate--cysteine ligase, putative, expressed
MaizeGDB (Corn) Zm00025a031712
Brachypodium KQK00011
Barley HORVU7Hr1G116040.1 , HORVU7Hr1G116040.3 , HORVU7Hr1G116040.2 , HORVU7Hr1G116040.5 , HORVU7Hr1G116040.4 , HORVU7Hr1G116040.7 , HORVU7Hr1G116040.6
Wheat TraesCS7D02G510700 , TraesCS6D02G188000 , TraesCS7A02G521200 , TraesCS7B02G438000 , TraesCS6B02G227200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G133000 - -
2 Sobic.002G390600 sec20 domain containing protein, expressed K08494: novel plant SNARE
3 Sobic.003G286400 DUF623 domain containing protein, expressed -
4 Sobic.010G014300 expressed protein -
5 Sobic.001G096900 BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
6 Sobic.002G282100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.004G288400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
8 Sobic.006G177100 expressed protein K03671: thioredoxin 1
9 Sobic.009G136600 peptide transporter PTR2, putative, expressed -
10 Sobic.007G181100 MATE efflux family protein("PubMedID : 26759170,PubMedID : 24597475")@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.005G168500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
12 Sobic.006G108100 LTPL81 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.001G496700 IQ calmodulin-binding motif family protein, putative, expressed -
14 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
15 Sobic.001G397700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
16 Sobic.007G092300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.003G006500 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.001G428700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.003G359200 DUF740 domain containing protein, expressed -
20 Sobic.001G080600 expressed protein -


Gene co-expression network
sample Sobic004G189600 Sobic004G189600 Sobic004G133000 Sobic004G133000 Sobic004G189600--Sobic004G133000 Sobic002G390600 Sobic002G390600 Sobic004G189600--Sobic002G390600 Sobic003G286400 Sobic003G286400 Sobic004G189600--Sobic003G286400 Sobic010G014300 Sobic010G014300 Sobic004G189600--Sobic010G014300 Sobic001G096900 Sobic001G096900 Sobic004G189600--Sobic001G096900 Sobic002G282100 Sobic002G282100 Sobic004G189600--Sobic002G282100 Sobic004G288400 Sobic004G288400 Sobic004G189600--Sobic004G288400 Sobic006G177100 Sobic006G177100 Sobic004G189600--Sobic006G177100 Sobic009G136600 Sobic009G136600 Sobic004G189600--Sobic009G136600 Sobic006G176400 Sobic006G176400 Sobic004G133000--Sobic006G176400 Sobic001G070200 Sobic001G070200 Sobic004G133000--Sobic001G070200 Sobic004G133000--Sobic003G286400 Sobic004G133000--Sobic002G390600 Sobic009G081400 Sobic009G081400 Sobic004G133000--Sobic009G081400 Sobic010G234900 Sobic010G234900 Sobic004G133000--Sobic010G234900 Sobic001G397700 Sobic001G397700 Sobic004G133000--Sobic001G397700 Sobic004G198200 Sobic004G198200 Sobic004G133000--Sobic004G198200 Sobic004G107900 Sobic004G107900 Sobic004G133000--Sobic004G107900 Sobic002G390600--Sobic004G133000 Sobic009G167500 Sobic009G167500 Sobic002G390600--Sobic009G167500 Sobic002G390600--Sobic001G397700 Sobic006G003000 Sobic006G003000 Sobic002G390600--Sobic006G003000 Sobic002G005400 Sobic002G005400 Sobic002G390600--Sobic002G005400 Sobic001G496700 Sobic001G496700 Sobic002G390600--Sobic001G496700 Sobic002G390600--Sobic004G189600 Sobic008G156900 Sobic008G156900 Sobic002G390600--Sobic008G156900 Sobic002G390600--Sobic004G107900 Sobic003G286400--Sobic010G014300 Sobic007G092300 Sobic007G092300 Sobic003G286400--Sobic007G092300 Sobic003G286400--Sobic004G133000 Sobic001G062700 Sobic001G062700 Sobic003G286400--Sobic001G062700 Sobic001G462100 Sobic001G462100 Sobic003G286400--Sobic001G462100 Sobic010G119600 Sobic010G119600 Sobic003G286400--Sobic010G119600 Sobic010G259200 Sobic010G259200 Sobic003G286400--Sobic010G259200 Sobic010G194500 Sobic010G194500 Sobic003G286400--Sobic010G194500 Sobic003G286400--Sobic006G003000 Sobic010G014300--Sobic010G259200 Sobic010G014300--Sobic010G119600 Sobic010G087200 Sobic010G087200 Sobic010G014300--Sobic010G087200 Sobic006G166700 Sobic006G166700 Sobic010G014300--Sobic006G166700 Sobic007G206700 Sobic007G206700 Sobic010G014300--Sobic007G206700 Sobic002G001300 Sobic002G001300 Sobic010G014300--Sobic002G001300 Sobic010G014300--Sobic001G062700 Sobic010G014300--Sobic007G092300 Sobic001G005000 Sobic001G005000 Sobic010G014300--Sobic001G005000 Sobic010G238100 Sobic010G238100 Sobic001G096900--Sobic010G238100 Sobic001G096900--Sobic002G390600 Sobic001G096900--Sobic001G496700 Sobic001G054800 Sobic001G054800 Sobic001G096900--Sobic001G054800 Sobic001G096900--Sobic009G167500 Sobic001G096900--Sobic004G189600 Sobic003G187100 Sobic003G187100 Sobic001G096900--Sobic003G187100 Sobic001G096900--Sobic008G156900 Sobic001G009700 Sobic001G009700 Sobic001G096900--Sobic001G009700 Sobic009G190400 Sobic009G190400 Sobic002G282100--Sobic009G190400 Sobic003G040100 Sobic003G040100 Sobic002G282100--Sobic003G040100 Sobic004G061600 Sobic004G061600 Sobic002G282100--Sobic004G061600 Sobic002G282100--Sobic001G062700 Sobic004G156600 Sobic004G156600 Sobic002G282100--Sobic004G156600 Sobic006G155900 Sobic006G155900 Sobic002G282100--Sobic006G155900 Sobic005G168500 Sobic005G168500 Sobic002G282100--Sobic005G168500 Sobic007G076800 Sobic007G076800 Sobic002G282100--Sobic007G076800 Sobic003G390300 Sobic003G390300 Sobic002G282100--Sobic003G390300 Sobic004G288400--Sobic006G166700 Sobic004G288400--Sobic010G014300 Sobic005G198300 Sobic005G198300 Sobic004G288400--Sobic005G198300 Sobic001G239400 Sobic001G239400 Sobic004G288400--Sobic001G239400 Sobic002G339400 Sobic002G339400 Sobic004G288400--Sobic002G339400 Sobic004G288400--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic004G288400--Sobic001G428700 Sobic007G133600 Sobic007G133600 Sobic004G288400--Sobic007G133600 Sobic004G288400--Sobic001G005000 Sobic010G097400 Sobic010G097400 Sobic006G177100--Sobic010G097400 Sobic006G177100--Sobic002G339400 Sobic006G177100--Sobic004G288400 Sobic002G366700 Sobic002G366700 Sobic006G177100--Sobic002G366700 Sobic006G177100--Sobic010G014300 Sobic009G050100 Sobic009G050100 Sobic006G177100--Sobic009G050100 Sobic001G494150 Sobic001G494150 Sobic006G177100--Sobic001G494150 Sobic003G284500 Sobic003G284500 Sobic006G177100--Sobic003G284500 Sobic006G258400 Sobic006G258400 Sobic006G177100--Sobic006G258400 Sobic003G006500 Sobic003G006500 Sobic009G136600--Sobic003G006500 Sobic009G254400 Sobic009G254400 Sobic009G136600--Sobic009G254400 Sobic003G406500 Sobic003G406500 Sobic009G136600--Sobic003G406500 Sobic001G263500 Sobic001G263500 Sobic009G136600--Sobic001G263500 Sobic001G247700 Sobic001G247700 Sobic009G136600--Sobic001G247700 Sobic006G163650 Sobic006G163650 Sobic009G136600--Sobic006G163650 Sobic002G425600 Sobic002G425600 Sobic009G136600--Sobic002G425600 Sobic009G136600--Sobic005G168500 Sobic010G209800 Sobic010G209800 Sobic009G136600--Sobic010G209800
Octagon: transcription factors


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