Gene annotation
Transcriptome id Sobic.004G288400.1
Synonym Sb04g032400
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
harpin-induced protein 1 domain containing protein, expressed
UniProt C5Y1D6
Pfam PF03168
Panther DB PTHR31852 PTHR31852:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22870 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os02g44670.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021444
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166700 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.010G014300 expressed protein -
3 Sobic.005G198300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
5 Sobic.002G339400 expressed protein -
6 Sobic.010G087200 expressed protein -
7 Sobic.001G428700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.007G133600 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
9 Sobic.001G005000 receptor protein kinase, putative, expressed -
10 Sobic.001G494150 - -
11 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.006G177100 expressed protein K03671: thioredoxin 1
15 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -
16 Sobic.002G245900 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.010G119600 embryogenesis transmembrane protein, putative, expressed -
18 Sobic.002G366700 expressed protein -
19 Sobic.006G257100 dirigent-like protein pDIR17, putative, expressed -
20 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -


Gene co-expression network
sample Sobic004G288400 Sobic004G288400 Sobic006G166700 Sobic006G166700 Sobic004G288400--Sobic006G166700 Sobic010G014300 Sobic010G014300 Sobic004G288400--Sobic010G014300 Sobic005G198300 Sobic005G198300 Sobic004G288400--Sobic005G198300 Sobic001G239400 Sobic001G239400 Sobic004G288400--Sobic001G239400 Sobic002G339400 Sobic002G339400 Sobic004G288400--Sobic002G339400 Sobic010G087200 Sobic010G087200 Sobic004G288400--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic004G288400--Sobic001G428700 Sobic007G133600 Sobic007G133600 Sobic004G288400--Sobic007G133600 Sobic001G005000 Sobic001G005000 Sobic004G288400--Sobic001G005000 Sobic006G166700--Sobic010G014300 Sobic006G166700--Sobic001G005000 Sobic006G166700--Sobic010G087200 Sobic002G001300 Sobic002G001300 Sobic006G166700--Sobic002G001300 Sobic006G166700--Sobic004G288400 Sobic006G166700--Sobic001G239400 Sobic010G259200 Sobic010G259200 Sobic006G166700--Sobic010G259200 Sobic010G194500 Sobic010G194500 Sobic006G166700--Sobic010G194500 Sobic009G076800 Sobic009G076800 Sobic006G166700--Sobic009G076800 Sobic010G014300--Sobic010G259200 Sobic010G119600 Sobic010G119600 Sobic010G014300--Sobic010G119600 Sobic010G014300--Sobic010G087200 Sobic010G014300--Sobic006G166700 Sobic007G206700 Sobic007G206700 Sobic010G014300--Sobic007G206700 Sobic010G014300--Sobic002G001300 Sobic001G062700 Sobic001G062700 Sobic010G014300--Sobic001G062700 Sobic007G092300 Sobic007G092300 Sobic010G014300--Sobic007G092300 Sobic010G014300--Sobic001G005000 Sobic009G123000 Sobic009G123000 Sobic005G198300--Sobic009G123000 Sobic006G003000 Sobic006G003000 Sobic005G198300--Sobic006G003000 Sobic005G198300--Sobic004G288400 Sobic003G127600 Sobic003G127600 Sobic005G198300--Sobic003G127600 Sobic005G198300--Sobic006G166700 Sobic001G148600 Sobic001G148600 Sobic005G198300--Sobic001G148600 Sobic005G198300--Sobic010G014300 Sobic001G416800 Sobic001G416800 Sobic005G198300--Sobic001G416800 Sobic005G198300--Sobic010G087200 Sobic001G239400--Sobic001G005000 Sobic001G239400--Sobic007G133600 Sobic004G249700 Sobic004G249700 Sobic001G239400--Sobic004G249700 Sobic001G239400--Sobic006G166700 Sobic001G239400--Sobic004G288400 Sobic009G008300 Sobic009G008300 Sobic001G239400--Sobic009G008300 Sobic001G239400--Sobic009G076800 Sobic001G239400--Sobic010G194500 Sobic001G239400--Sobic006G003000 Sobic002G366700 Sobic002G366700 Sobic002G339400--Sobic002G366700 Sobic001G494150 Sobic001G494150 Sobic002G339400--Sobic001G494150 Sobic002G339400--Sobic010G087200 Sobic002G339400--Sobic001G428700 Sobic002G339400--Sobic004G288400 Sobic002G339400--Sobic010G014300 Sobic006G075700 Sobic006G075700 Sobic002G339400--Sobic006G075700 Sobic002G339400--Sobic006G166700 Sobic002G339400--Sobic010G259200 Sobic010G087200--Sobic002G001300 Sobic010G087200--Sobic010G259200 Sobic010G087200--Sobic007G206700 Sobic010G087200--Sobic001G428700 Sobic010G087200--Sobic010G014300 Sobic010G087200--Sobic001G494150 Sobic010G087200--Sobic006G166700 Sobic010G087200--Sobic010G119600 Sobic010G087200--Sobic002G366700 Sobic001G428700--Sobic010G087200 Sobic001G428700--Sobic001G494150 Sobic001G428700--Sobic002G339400 Sobic001G428700--Sobic010G014300 Sobic001G428700--Sobic002G001300 Sobic001G428700--Sobic006G166700 Sobic001G428700--Sobic002G366700 Sobic001G428700--Sobic010G259200 Sobic002G348900 Sobic002G348900 Sobic001G428700--Sobic002G348900 Sobic007G133600--Sobic009G008300 Sobic002G245900 Sobic002G245900 Sobic007G133600--Sobic002G245900 Sobic007G133600--Sobic001G239400 Sobic007G133600--Sobic001G005000 Sobic007G133600--Sobic004G249700 Sobic007G133600--Sobic006G166700 Sobic007G133600--Sobic004G288400 Sobic003G057600 Sobic003G057600 Sobic007G133600--Sobic003G057600 Sobic007G133600--Sobic010G087200 Sobic001G005000--Sobic010G194500 Sobic001G005000--Sobic009G076800 Sobic001G005000--Sobic006G166700 Sobic001G005000--Sobic001G239400 Sobic006G018900 Sobic006G018900 Sobic001G005000--Sobic006G018900 Sobic001G005000--Sobic004G249700 Sobic001G005000--Sobic010G014300 Sobic001G005000--Sobic007G133600 Sobic001G462100 Sobic001G462100 Sobic001G005000--Sobic001G462100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.