Gene annotation
Transcriptome id Sobic.001G239400.1
Synonym RTM2, Sb01g021180
Functional annotation hsp20/alpha crystallin family protein, putative, expressed
UniProt A0A1B6QKM9
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF138
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04890 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os10g30162.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006826 , Zm00025a017756
Brachypodium -
Barley -
Wheat TraesCS1B02G155800 , TraesCS1A02G137300 , TraesCS1D02G138200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005000 receptor protein kinase, putative, expressed -
2 Sobic.007G133600 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
3 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.006G166700 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.004G288400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.009G008300 expressed protein -
7 Sobic.009G076800 GIL1, putative, expressed -
8 Sobic.010G194500 expansin precursor, putative, expressed -
9 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
11 Sobic.002G245900 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -
13 Sobic.010G014300 expressed protein -
14 Sobic.005G198300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G107900 bZIP transcription factor family protein, putative, expressed -
16 Sobic.006G257100 dirigent-like protein pDIR17, putative, expressed -
17 Sobic.003G395500 expressed protein -
18 Sobic.010G087200 expressed protein -
19 Sobic.003G057600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G244300 fasciclin domain containing protein, expressed -


Gene co-expression network
sample Sobic001G239400 Sobic001G239400 Sobic001G005000 Sobic001G005000 Sobic001G239400--Sobic001G005000 Sobic007G133600 Sobic007G133600 Sobic001G239400--Sobic007G133600 Sobic004G249700 Sobic004G249700 Sobic001G239400--Sobic004G249700 Sobic006G166700 Sobic006G166700 Sobic001G239400--Sobic006G166700 Sobic004G288400 Sobic004G288400 Sobic001G239400--Sobic004G288400 Sobic009G008300 Sobic009G008300 Sobic001G239400--Sobic009G008300 Sobic009G076800 Sobic009G076800 Sobic001G239400--Sobic009G076800 Sobic010G194500 Sobic010G194500 Sobic001G239400--Sobic010G194500 Sobic006G003000 Sobic006G003000 Sobic001G239400--Sobic006G003000 Sobic001G005000--Sobic010G194500 Sobic001G005000--Sobic009G076800 Sobic001G005000--Sobic006G166700 Sobic001G005000--Sobic001G239400 Sobic006G018900 Sobic006G018900 Sobic001G005000--Sobic006G018900 Sobic001G005000--Sobic004G249700 Sobic010G014300 Sobic010G014300 Sobic001G005000--Sobic010G014300 Sobic001G005000--Sobic007G133600 Sobic001G462100 Sobic001G462100 Sobic001G005000--Sobic001G462100 Sobic007G133600--Sobic009G008300 Sobic002G245900 Sobic002G245900 Sobic007G133600--Sobic002G245900 Sobic007G133600--Sobic001G239400 Sobic007G133600--Sobic001G005000 Sobic007G133600--Sobic004G249700 Sobic007G133600--Sobic006G166700 Sobic007G133600--Sobic004G288400 Sobic003G057600 Sobic003G057600 Sobic007G133600--Sobic003G057600 Sobic010G087200 Sobic010G087200 Sobic007G133600--Sobic010G087200 Sobic004G249700--Sobic001G239400 Sobic004G249700--Sobic001G005000 Sobic004G249700--Sobic010G194500 Sobic004G249700--Sobic009G008300 Sobic004G249700--Sobic007G133600 Sobic004G249700--Sobic009G076800 Sobic004G249700--Sobic006G166700 Sobic004G107900 Sobic004G107900 Sobic004G249700--Sobic004G107900 Sobic004G249700--Sobic006G018900 Sobic006G166700--Sobic010G014300 Sobic006G166700--Sobic001G005000 Sobic006G166700--Sobic010G087200 Sobic002G001300 Sobic002G001300 Sobic006G166700--Sobic002G001300 Sobic006G166700--Sobic004G288400 Sobic006G166700--Sobic001G239400 Sobic010G259200 Sobic010G259200 Sobic006G166700--Sobic010G259200 Sobic006G166700--Sobic010G194500 Sobic006G166700--Sobic009G076800 Sobic004G288400--Sobic006G166700 Sobic004G288400--Sobic010G014300 Sobic005G198300 Sobic005G198300 Sobic004G288400--Sobic005G198300 Sobic004G288400--Sobic001G239400 Sobic002G339400 Sobic002G339400 Sobic004G288400--Sobic002G339400 Sobic004G288400--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic004G288400--Sobic001G428700 Sobic004G288400--Sobic007G133600 Sobic004G288400--Sobic001G005000 Sobic009G008300--Sobic002G245900 Sobic009G008300--Sobic007G133600 Sobic009G008300--Sobic003G057600 Sobic009G008300--Sobic004G249700 Sobic009G008300--Sobic001G239400 Sobic001G076800 Sobic001G076800 Sobic009G008300--Sobic001G076800 Sobic004G042700 Sobic004G042700 Sobic009G008300--Sobic004G042700 Sobic002G032900 Sobic002G032900 Sobic009G008300--Sobic002G032900 Sobic001G395800 Sobic001G395800 Sobic009G008300--Sobic001G395800 Sobic009G076800--Sobic001G005000 Sobic009G076800--Sobic010G194500 Sobic002G005200 Sobic002G005200 Sobic009G076800--Sobic002G005200 Sobic009G076800--Sobic006G018900 Sobic006G257100 Sobic006G257100 Sobic009G076800--Sobic006G257100 Sobic009G076800--Sobic006G166700 Sobic009G076800--Sobic004G249700 Sobic009G076800--Sobic001G239400 Sobic009G076800--Sobic010G014300 Sobic010G194500--Sobic001G005000 Sobic004G153700 Sobic004G153700 Sobic010G194500--Sobic004G153700 Sobic010G194500--Sobic006G018900 Sobic003G226100 Sobic003G226100 Sobic010G194500--Sobic003G226100 Sobic009G204800 Sobic009G204800 Sobic010G194500--Sobic009G204800 Sobic010G194500--Sobic009G076800 Sobic010G008000 Sobic010G008000 Sobic010G194500--Sobic010G008000 Sobic007G206700 Sobic007G206700 Sobic010G194500--Sobic007G206700 Sobic010G194500--Sobic004G249700 Sobic009G123000 Sobic009G123000 Sobic006G003000--Sobic009G123000 Sobic006G003000--Sobic005G198300 Sobic006G003000--Sobic010G194500 Sobic006G003000--Sobic001G005000 Sobic006G003000--Sobic006G018900 Sobic001G148600 Sobic001G148600 Sobic006G003000--Sobic001G148600 Sobic006G003000--Sobic001G239400 Sobic006G003000--Sobic010G014300 Sobic010G161300 Sobic010G161300 Sobic006G003000--Sobic010G161300
Octagon: transcription factors


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