Gene annotation
Transcriptome id Sobic.010G194500.1
Synonym EXP20, Sb10g024380, ATHEXPALPHA1.23, ATEXPA20, EXPA20, ATEXP20
Functional annotation expansin precursor, putative, expressed
UniProt C5Z656
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38210 : expansin A20
RAP-DB (Rice) LOC_Os06g41700.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051522
Brachypodium -
Barley HORVU7Hr1G093680.8 , HORVU7Hr1G093680.3 , HORVU7Hr1G093680.2 , HORVU7Hr1G093680.1 , HORVU7Hr1G093680.7 , HORVU7Hr1G093680.6 , HORVU7Hr1G093680.5 , HORVU7Hr1G093680.4
Wheat TraesCS7D02G393300 , TraesCS7B02G299700 , TraesCS7A02G399100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005000 receptor protein kinase, putative, expressed -
2 Sobic.004G153700 expressed protein -
3 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
4 Sobic.003G226100 expressed protein -
5 Sobic.009G204800 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
6 Sobic.009G076800 GIL1, putative, expressed -
7 Sobic.010G008000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
9 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.010G014300 expressed protein -
11 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.006G166700 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.007G092300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
17 Sobic.003G083700 DNA binding protein, putative, expressed -
18 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -
19 Sobic.010G087200 expressed protein -
20 Sobic.010G119600 embryogenesis transmembrane protein, putative, expressed -


Gene co-expression network
sample Sobic010G194500 Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic010G194500--Sobic001G005000 Sobic004G153700 Sobic004G153700 Sobic010G194500--Sobic004G153700 Sobic006G018900 Sobic006G018900 Sobic010G194500--Sobic006G018900 Sobic003G226100 Sobic003G226100 Sobic010G194500--Sobic003G226100 Sobic009G204800 Sobic009G204800 Sobic010G194500--Sobic009G204800 Sobic009G076800 Sobic009G076800 Sobic010G194500--Sobic009G076800 Sobic010G008000 Sobic010G008000 Sobic010G194500--Sobic010G008000 Sobic007G206700 Sobic007G206700 Sobic010G194500--Sobic007G206700 Sobic004G249700 Sobic004G249700 Sobic010G194500--Sobic004G249700 Sobic001G005000--Sobic010G194500 Sobic001G005000--Sobic009G076800 Sobic006G166700 Sobic006G166700 Sobic001G005000--Sobic006G166700 Sobic001G239400 Sobic001G239400 Sobic001G005000--Sobic001G239400 Sobic001G005000--Sobic006G018900 Sobic001G005000--Sobic004G249700 Sobic010G014300 Sobic010G014300 Sobic001G005000--Sobic010G014300 Sobic007G133600 Sobic007G133600 Sobic001G005000--Sobic007G133600 Sobic001G462100 Sobic001G462100 Sobic001G005000--Sobic001G462100 Sobic004G153700--Sobic003G226100 Sobic004G153700--Sobic010G008000 Sobic004G153700--Sobic010G194500 Sobic004G153700--Sobic009G204800 Sobic003G083700 Sobic003G083700 Sobic004G153700--Sobic003G083700 Sobic004G153700--Sobic006G018900 Sobic004G153700--Sobic007G206700 Sobic007G092300 Sobic007G092300 Sobic004G153700--Sobic007G092300 Sobic010G259200 Sobic010G259200 Sobic004G153700--Sobic010G259200 Sobic006G018900--Sobic010G194500 Sobic006G018900--Sobic001G005000 Sobic006G018900--Sobic004G153700 Sobic004G107900 Sobic004G107900 Sobic006G018900--Sobic004G107900 Sobic006G018900--Sobic009G076800 Sobic006G018900--Sobic010G014300 Sobic006G018900--Sobic007G092300 Sobic006G003000 Sobic006G003000 Sobic006G018900--Sobic006G003000 Sobic006G018900--Sobic001G239400 Sobic003G226100--Sobic004G153700 Sobic003G226100--Sobic009G204800 Sobic003G226100--Sobic010G194500 Sobic003G226100--Sobic010G008000 Sobic003G226100--Sobic003G083700 Sobic003G415500 Sobic003G415500 Sobic003G226100--Sobic003G415500 Sobic005G035000 Sobic005G035000 Sobic003G226100--Sobic005G035000 Sobic003G226100--Sobic007G206700 Sobic001G189500 Sobic001G189500 Sobic003G226100--Sobic001G189500 Sobic009G204800--Sobic003G226100 Sobic009G204800--Sobic004G153700 Sobic009G204800--Sobic010G194500 Sobic009G204800--Sobic007G206700 Sobic009G204800--Sobic003G083700 Sobic002G001300 Sobic002G001300 Sobic009G204800--Sobic002G001300 Sobic002G277700 Sobic002G277700 Sobic009G204800--Sobic002G277700 Sobic009G204800--Sobic010G008000 Sobic009G204800--Sobic001G005000 Sobic009G076800--Sobic001G005000 Sobic009G076800--Sobic010G194500 Sobic002G005200 Sobic002G005200 Sobic009G076800--Sobic002G005200 Sobic009G076800--Sobic006G018900 Sobic006G257100 Sobic006G257100 Sobic009G076800--Sobic006G257100 Sobic009G076800--Sobic006G166700 Sobic009G076800--Sobic004G249700 Sobic009G076800--Sobic001G239400 Sobic009G076800--Sobic010G014300 Sobic010G008000--Sobic004G153700 Sobic010G008000--Sobic003G083700 Sobic010G008000--Sobic010G259200 Sobic010G008000--Sobic007G206700 Sobic010G119600 Sobic010G119600 Sobic010G008000--Sobic010G119600 Sobic010G008000--Sobic002G001300 Sobic010G008000--Sobic010G194500 Sobic003G390300 Sobic003G390300 Sobic010G008000--Sobic003G390300 Sobic001G402701 Sobic001G402701 Sobic010G008000--Sobic001G402701 Sobic007G206700--Sobic010G259200 Sobic007G206700--Sobic002G001300 Sobic007G206700--Sobic003G083700 Sobic007G206700--Sobic010G119600 Sobic007G206700--Sobic001G402701 Sobic007G206700--Sobic003G390300 Sobic003G104900 Sobic003G104900 Sobic007G206700--Sobic003G104900 Sobic010G087200 Sobic010G087200 Sobic007G206700--Sobic010G087200 Sobic001G062700 Sobic001G062700 Sobic007G206700--Sobic001G062700 Sobic004G249700--Sobic001G239400 Sobic004G249700--Sobic001G005000 Sobic004G249700--Sobic010G194500 Sobic009G008300 Sobic009G008300 Sobic004G249700--Sobic009G008300 Sobic004G249700--Sobic007G133600 Sobic004G249700--Sobic009G076800 Sobic004G249700--Sobic006G166700 Sobic004G249700--Sobic004G107900 Sobic004G249700--Sobic006G018900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.