Gene annotation
Transcriptome id Sobic.006G003000.1
Synonym Sb06g000470
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5YB97
Pfam -
Panther DB PTHR33472 PTHR33472:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63310 : -
RAP-DB (Rice) LOC_Os04g01500.1 : expressed protein
MaizeGDB (Corn) Zm00025a055502 , Zm00025a012191
Brachypodium -
Barley HORVU2Hr1G005620.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G123000 expressed protein -
2 Sobic.005G198300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G194500 expansin precursor, putative, expressed -
4 Sobic.001G005000 receptor protein kinase, putative, expressed -
5 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
6 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
7 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
8 Sobic.010G014300 expressed protein -
9 Sobic.010G161300 receptor-like kinase, putative, expressed -
10 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
11 Sobic.007G092300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.009G076800 GIL1, putative, expressed -
13 Sobic.004G288400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.004G153700 expressed protein -
15 Sobic.006G166700 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -
17 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
18 Sobic.001G402701 - -
19 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
20 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G003000 Sobic006G003000 Sobic009G123000 Sobic009G123000 Sobic006G003000--Sobic009G123000 Sobic005G198300 Sobic005G198300 Sobic006G003000--Sobic005G198300 Sobic010G194500 Sobic010G194500 Sobic006G003000--Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic006G003000--Sobic001G005000 Sobic006G018900 Sobic006G018900 Sobic006G003000--Sobic006G018900 Sobic001G148600 Sobic001G148600 Sobic006G003000--Sobic001G148600 Sobic001G239400 Sobic001G239400 Sobic006G003000--Sobic001G239400 Sobic010G014300 Sobic010G014300 Sobic006G003000--Sobic010G014300 Sobic010G161300 Sobic010G161300 Sobic006G003000--Sobic010G161300 Sobic003G127600 Sobic003G127600 Sobic009G123000--Sobic003G127600 Sobic001G416800 Sobic001G416800 Sobic009G123000--Sobic001G416800 Sobic009G123000--Sobic005G198300 Sobic009G123000--Sobic006G003000 Sobic001G416900 Sobic001G416900 Sobic009G123000--Sobic001G416900 Sobic009G123000--Sobic001G148600 Sobic008G061000 Sobic008G061000 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic009G123000--Sobic010G161300 Sobic005G198300--Sobic009G123000 Sobic005G198300--Sobic006G003000 Sobic004G288400 Sobic004G288400 Sobic005G198300--Sobic004G288400 Sobic005G198300--Sobic003G127600 Sobic006G166700 Sobic006G166700 Sobic005G198300--Sobic006G166700 Sobic005G198300--Sobic001G148600 Sobic005G198300--Sobic010G014300 Sobic005G198300--Sobic001G416800 Sobic010G087200 Sobic010G087200 Sobic005G198300--Sobic010G087200 Sobic010G194500--Sobic001G005000 Sobic004G153700 Sobic004G153700 Sobic010G194500--Sobic004G153700 Sobic010G194500--Sobic006G018900 Sobic003G226100 Sobic003G226100 Sobic010G194500--Sobic003G226100 Sobic009G204800 Sobic009G204800 Sobic010G194500--Sobic009G204800 Sobic009G076800 Sobic009G076800 Sobic010G194500--Sobic009G076800 Sobic010G008000 Sobic010G008000 Sobic010G194500--Sobic010G008000 Sobic007G206700 Sobic007G206700 Sobic010G194500--Sobic007G206700 Sobic004G249700 Sobic004G249700 Sobic010G194500--Sobic004G249700 Sobic001G005000--Sobic010G194500 Sobic001G005000--Sobic009G076800 Sobic001G005000--Sobic006G166700 Sobic001G005000--Sobic001G239400 Sobic001G005000--Sobic006G018900 Sobic001G005000--Sobic004G249700 Sobic001G005000--Sobic010G014300 Sobic007G133600 Sobic007G133600 Sobic001G005000--Sobic007G133600 Sobic001G462100 Sobic001G462100 Sobic001G005000--Sobic001G462100 Sobic006G018900--Sobic010G194500 Sobic006G018900--Sobic001G005000 Sobic006G018900--Sobic004G153700 Sobic004G107900 Sobic004G107900 Sobic006G018900--Sobic004G107900 Sobic006G018900--Sobic009G076800 Sobic006G018900--Sobic010G014300 Sobic007G092300 Sobic007G092300 Sobic006G018900--Sobic007G092300 Sobic006G018900--Sobic006G003000 Sobic006G018900--Sobic001G239400 Sobic001G402701 Sobic001G402701 Sobic001G148600--Sobic001G402701 Sobic008G031600 Sobic008G031600 Sobic001G148600--Sobic008G031600 Sobic003G201400 Sobic003G201400 Sobic001G148600--Sobic003G201400 Sobic001G460700 Sobic001G460700 Sobic001G148600--Sobic001G460700 Sobic001G148600--Sobic010G161300 Sobic010G029200 Sobic010G029200 Sobic001G148600--Sobic010G029200 Sobic010G045300 Sobic010G045300 Sobic001G148600--Sobic010G045300 Sobic010G208300 Sobic010G208300 Sobic001G148600--Sobic010G208300 Sobic003G081400 Sobic003G081400 Sobic001G148600--Sobic003G081400 Sobic001G239400--Sobic001G005000 Sobic001G239400--Sobic007G133600 Sobic001G239400--Sobic004G249700 Sobic001G239400--Sobic006G166700 Sobic001G239400--Sobic004G288400 Sobic009G008300 Sobic009G008300 Sobic001G239400--Sobic009G008300 Sobic001G239400--Sobic009G076800 Sobic001G239400--Sobic010G194500 Sobic001G239400--Sobic006G003000 Sobic010G259200 Sobic010G259200 Sobic010G014300--Sobic010G259200 Sobic010G119600 Sobic010G119600 Sobic010G014300--Sobic010G119600 Sobic010G014300--Sobic010G087200 Sobic010G014300--Sobic006G166700 Sobic010G014300--Sobic007G206700 Sobic002G001300 Sobic002G001300 Sobic010G014300--Sobic002G001300 Sobic001G062700 Sobic001G062700 Sobic010G014300--Sobic001G062700 Sobic010G014300--Sobic007G092300 Sobic010G014300--Sobic001G005000 Sobic010G161300--Sobic001G148600 Sobic004G128600 Sobic004G128600 Sobic010G161300--Sobic004G128600 Sobic006G197000 Sobic006G197000 Sobic010G161300--Sobic006G197000 Sobic010G161300--Sobic008G031600 Sobic010G161300--Sobic003G201400 Sobic005G226900 Sobic005G226900 Sobic010G161300--Sobic005G226900 Sobic010G014200 Sobic010G014200 Sobic010G161300--Sobic010G014200 Sobic006G278400 Sobic006G278400 Sobic010G161300--Sobic006G278400 Sobic004G227000 Sobic004G227000 Sobic010G161300--Sobic004G227000
Octagon: transcription factors


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