Gene annotation
Transcriptome id Sobic.003G006500.1
Synonym Sb03g000760
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XJM4
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF211
NCBI CDD KOG0295; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G26490 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g13140.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035994 , Zm00025a022815
Brachypodium KQK03433
Barley HORVU3Hr1G031720.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G158400 DUF617 domain containing protein, expressed -
2 Sobic.010G014900 expressed protein -
3 Sobic.005G168500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.004G061600 expressed protein -
5 Sobic.008G136900 expressed protein -
6 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
7 Sobic.004G107400 expressed protein -
8 Sobic.003G359200 DUF740 domain containing protein, expressed -
9 Sobic.003G390300 expressed protein -
10 Sobic.009G028600 expressed protein -
11 Sobic.001G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
12 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
13 Sobic.008G163800 expressed protein -
14 Sobic.001G137200 homeobox domain containing protein, expressed -
15 Sobic.007G092300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.006G171000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL7 - SBP-box gene family member, expressed -
17 Sobic.009G061700 expressed protein -
18 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
19 Sobic.006G186200 exostosin family domain containing protein, expressed -
20 Sobic.002G285525 - -


Gene co-expression network
sample Sobic003G006500 Sobic003G006500 Sobic007G158400 Sobic007G158400 Sobic003G006500--Sobic007G158400 Sobic010G014900 Sobic010G014900 Sobic003G006500--Sobic010G014900 Sobic005G168500 Sobic005G168500 Sobic003G006500--Sobic005G168500 Sobic004G061600 Sobic004G061600 Sobic003G006500--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G006500--Sobic008G136900 Sobic007G153300 Sobic007G153300 Sobic003G006500--Sobic007G153300 Sobic004G107400 Sobic004G107400 Sobic003G006500--Sobic004G107400 Sobic003G359200 Sobic003G359200 Sobic003G006500--Sobic003G359200 Sobic003G390300 Sobic003G390300 Sobic003G006500--Sobic003G390300 Sobic007G158400--Sobic010G014900 Sobic007G158400--Sobic004G107400 Sobic001G137200 Sobic001G137200 Sobic007G158400--Sobic001G137200 Sobic006G171000 Sobic006G171000 Sobic007G158400--Sobic006G171000 Sobic007G158400--Sobic004G061600 Sobic009G028600 Sobic009G028600 Sobic007G158400--Sobic009G028600 Sobic007G158400--Sobic005G168500 Sobic005G231800 Sobic005G231800 Sobic007G158400--Sobic005G231800 Sobic007G158400--Sobic003G006500 Sobic010G014900--Sobic007G158400 Sobic010G014900--Sobic004G107400 Sobic010G014900--Sobic001G137200 Sobic010G014900--Sobic006G171000 Sobic010G014900--Sobic009G028600 Sobic010G014900--Sobic005G231800 Sobic002G285525 Sobic002G285525 Sobic010G014900--Sobic002G285525 Sobic004G226300 Sobic004G226300 Sobic010G014900--Sobic004G226300 Sobic001G527400 Sobic001G527400 Sobic010G014900--Sobic001G527400 Sobic005G168500--Sobic007G158400 Sobic005G168500--Sobic010G014900 Sobic005G168500--Sobic003G006500 Sobic005G168500--Sobic004G061600 Sobic005G168500--Sobic003G390300 Sobic005G168500--Sobic004G107400 Sobic005G168500--Sobic008G136900 Sobic005G168500--Sobic009G028600 Sobic001G062700 Sobic001G062700 Sobic005G168500--Sobic001G062700 Sobic004G061600--Sobic003G390300 Sobic004G061600--Sobic007G158400 Sobic004G061600--Sobic008G136900 Sobic004G061600--Sobic010G014900 Sobic004G061600--Sobic001G062700 Sobic004G061600--Sobic004G107400 Sobic004G061600--Sobic005G168500 Sobic004G061600--Sobic001G137200 Sobic006G273500 Sobic006G273500 Sobic004G061600--Sobic006G273500 Sobic008G136900--Sobic003G390300 Sobic008G136900--Sobic004G061600 Sobic008G136900--Sobic004G107400 Sobic001G103400 Sobic001G103400 Sobic008G136900--Sobic001G103400 Sobic008G136900--Sobic007G158400 Sobic001G483700 Sobic001G483700 Sobic008G136900--Sobic001G483700 Sobic008G136900--Sobic010G014900 Sobic003G104900 Sobic003G104900 Sobic008G136900--Sobic003G104900 Sobic008G136900--Sobic009G028600 Sobic007G153300--Sobic003G359200 Sobic003G406500 Sobic003G406500 Sobic007G153300--Sobic003G406500 Sobic007G153300--Sobic003G006500 Sobic007G153300--Sobic004G061600 Sobic004G156600 Sobic004G156600 Sobic007G153300--Sobic004G156600 Sobic007G153300--Sobic003G390300 Sobic008G163800 Sobic008G163800 Sobic007G153300--Sobic008G163800 Sobic007G153300--Sobic001G062700 Sobic007G153300--Sobic008G136900 Sobic004G107400--Sobic006G171000 Sobic004G107400--Sobic010G014900 Sobic004G107400--Sobic001G137200 Sobic004G107400--Sobic003G390300 Sobic005G209800 Sobic005G209800 Sobic004G107400--Sobic005G209800 Sobic002G078850 Sobic002G078850 Sobic004G107400--Sobic002G078850 Sobic004G107400--Sobic003G104900 Sobic004G107400--Sobic005G231800 Sobic008G002100 Sobic008G002100 Sobic004G107400--Sobic008G002100 Sobic003G359200--Sobic007G153300 Sobic003G359200--Sobic004G107400 Sobic003G359200--Sobic010G014900 Sobic003G359200--Sobic001G062700 Sobic003G359200--Sobic003G390300 Sobic003G359200--Sobic007G158400 Sobic003G359200--Sobic003G006500 Sobic003G359200--Sobic008G163800 Sobic003G359200--Sobic005G168500 Sobic003G390300--Sobic004G107400 Sobic003G390300--Sobic004G061600 Sobic003G390300--Sobic008G136900 Sobic003G390300--Sobic001G062700 Sobic003G390300--Sobic003G104900 Sobic003G390300--Sobic010G014900 Sobic003G390300--Sobic007G158400 Sobic003G390300--Sobic001G137200 Sobic003G390300--Sobic009G028600
Octagon: transcription factors


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