Gene annotation
Transcriptome id Sobic.001G172800.1,Sobic.001G172800.2
Synonym ATE1, Sb01g015060
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WT87
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology K09564; peptidyl-prolyl isomerase E (cyclophilin E)
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G13690 : ATPase E1
RAP-DB (Rice) LOC_Os03g40310.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017324
Brachypodium KQK14265 , PNT74470 , PNT74469
Barley HORVU6Hr1G087100.1 , HORVU6Hr1G087100.2 , HORVU6Hr1G087100.3 , HORVU6Hr1G087100.4 , HORVU6Hr1G087100.5
Wheat TraesCS6A02G368600 , TraesCS6D02G352100 , TraesCS6B02G404500
Populus -


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cDNA sequences
Sobic.001G172800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G005700 - -
2 Sobic.010G094500 CS domain containing protein, putative, expressed -
3 Sobic.007G184400 60S ribosomal protein L7, putative, expressed K02937: RP-L7e, large subunit ribosomal protein L7e
4 Sobic.002G199100 peptidyl-prolyl cis-trans isomerase, putative, expressed K09579: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
5 Sobic.004G244800 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
6 Sobic.007G216600 protein phosphatase 2C, putative, expressed -
7 Sobic.009G225900 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
8 Sobic.002G273100 expressed protein K19033: PSRP4, 30S ribosomal protein S31
9 Sobic.006G212000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.002G380600 transcription elongation factor SPT4 homolog 1, putative, expressed K15171: SUPT4H1, transcription elongation factor SPT4
11 Sobic.003G338966 - -
12 Sobic.003G187100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.004G207700 expressed protein -
14 Sobic.001G477900 expressed protein -
15 Sobic.005G050200 abscisic stress-ripening, putative, expressed -
16 Sobic.010G238100 plant-specific domain TIGR01627 family protein, expressed -
17 Sobic.001G096900 BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
18 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
19 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
20 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2


Gene co-expression network
sample Sobic001G172800 Sobic001G172800 Sobic002G005700 Sobic002G005700 Sobic001G172800--Sobic002G005700 Sobic010G094500 Sobic010G094500 Sobic001G172800--Sobic010G094500 Sobic007G184400 Sobic007G184400 Sobic001G172800--Sobic007G184400 Sobic002G199100 Sobic002G199100 Sobic001G172800--Sobic002G199100 Sobic004G244800 Sobic004G244800 Sobic001G172800--Sobic004G244800 Sobic007G216600 Sobic007G216600 Sobic001G172800--Sobic007G216600 Sobic009G225900 Sobic009G225900 Sobic001G172800--Sobic009G225900 Sobic002G273100 Sobic002G273100 Sobic001G172800--Sobic002G273100 Sobic006G212000 Sobic006G212000 Sobic001G172800--Sobic006G212000 Sobic002G005700--Sobic007G184400 Sobic002G005700--Sobic001G172800 Sobic002G005700--Sobic010G094500 Sobic005G121100 Sobic005G121100 Sobic002G005700--Sobic005G121100 Sobic002G384200 Sobic002G384200 Sobic002G005700--Sobic002G384200 Sobic003G022800 Sobic003G022800 Sobic002G005700--Sobic003G022800 Sobic007G200100 Sobic007G200100 Sobic002G005700--Sobic007G200100 Sobic002G005700--Sobic006G212000 Sobic006G016600 Sobic006G016600 Sobic002G005700--Sobic006G016600 Sobic010G094500--Sobic002G005700 Sobic010G094500--Sobic001G172800 Sobic001G416900 Sobic001G416900 Sobic010G094500--Sobic001G416900 Sobic004G128000 Sobic004G128000 Sobic010G094500--Sobic004G128000 Sobic001G216800 Sobic001G216800 Sobic010G094500--Sobic001G216800 Sobic004G259700 Sobic004G259700 Sobic010G094500--Sobic004G259700 Sobic002G209300 Sobic002G209300 Sobic010G094500--Sobic002G209300 Sobic003G286100 Sobic003G286100 Sobic010G094500--Sobic003G286100 Sobic004G066000 Sobic004G066000 Sobic010G094500--Sobic004G066000 Sobic007G184400--Sobic002G005700 Sobic004G085200 Sobic004G085200 Sobic007G184400--Sobic004G085200 Sobic002G279000 Sobic002G279000 Sobic007G184400--Sobic002G279000 Sobic001G094500 Sobic001G094500 Sobic007G184400--Sobic001G094500 Sobic003G025200 Sobic003G025200 Sobic007G184400--Sobic003G025200 Sobic004G175700 Sobic004G175700 Sobic007G184400--Sobic004G175700 Sobic001G543300 Sobic001G543300 Sobic007G184400--Sobic001G543300 Sobic002G007100 Sobic002G007100 Sobic007G184400--Sobic002G007100 Sobic008G058300 Sobic008G058300 Sobic007G184400--Sobic008G058300 Sobic007G106400 Sobic007G106400 Sobic002G199100--Sobic007G106400 Sobic007G022200 Sobic007G022200 Sobic002G199100--Sobic007G022200 Sobic010G171400 Sobic010G171400 Sobic002G199100--Sobic010G171400 Sobic002G046700 Sobic002G046700 Sobic002G199100--Sobic002G046700 Sobic002G199100--Sobic001G172800 Sobic002G199100--Sobic002G273100 Sobic007G046400 Sobic007G046400 Sobic002G199100--Sobic007G046400 Sobic004G307700 Sobic004G307700 Sobic002G199100--Sobic004G307700 Sobic006G241900 Sobic006G241900 Sobic002G199100--Sobic006G241900 Sobic006G057200 Sobic006G057200 Sobic004G244800--Sobic006G057200 Sobic002G179300 Sobic002G179300 Sobic004G244800--Sobic002G179300 Sobic010G069400 Sobic010G069400 Sobic004G244800--Sobic010G069400 Sobic001G510800 Sobic001G510800 Sobic004G244800--Sobic001G510800 Sobic001G225700 Sobic001G225700 Sobic004G244800--Sobic001G225700 Sobic008G108601 Sobic008G108601 Sobic004G244800--Sobic008G108601 Sobic008G135000 Sobic008G135000 Sobic004G244800--Sobic008G135000 Sobic001G175300 Sobic001G175300 Sobic004G244800--Sobic001G175300 Sobic002G049300 Sobic002G049300 Sobic004G244800--Sobic002G049300 Sobic007G073600 Sobic007G073600 Sobic007G216600--Sobic007G073600 Sobic010G163900 Sobic010G163900 Sobic007G216600--Sobic010G163900 Sobic007G009000 Sobic007G009000 Sobic007G216600--Sobic007G009000 Sobic009G036900 Sobic009G036900 Sobic007G216600--Sobic009G036900 Sobic001G030400 Sobic001G030400 Sobic007G216600--Sobic001G030400 Sobic007G216600--Sobic009G225900 Sobic002G219800 Sobic002G219800 Sobic007G216600--Sobic002G219800 Sobic001G397700 Sobic001G397700 Sobic007G216600--Sobic001G397700 Sobic010G095600 Sobic010G095600 Sobic007G216600--Sobic010G095600 Sobic006G018900 Sobic006G018900 Sobic009G225900--Sobic006G018900 Sobic009G050100 Sobic009G050100 Sobic009G225900--Sobic009G050100 Sobic009G225900--Sobic007G216600 Sobic004G249700 Sobic004G249700 Sobic009G225900--Sobic004G249700 Sobic006G177100 Sobic006G177100 Sobic009G225900--Sobic006G177100 Sobic004G107900 Sobic004G107900 Sobic009G225900--Sobic004G107900 Sobic009G225900--Sobic004G244800 Sobic001G462100 Sobic001G462100 Sobic009G225900--Sobic001G462100 Sobic001G239400 Sobic001G239400 Sobic009G225900--Sobic001G239400 Sobic001G526900 Sobic001G526900 Sobic002G273100--Sobic001G526900 Sobic004G352900 Sobic004G352900 Sobic002G273100--Sobic004G352900 Sobic002G273100--Sobic007G200100 Sobic002G427900 Sobic002G427900 Sobic002G273100--Sobic002G427900 Sobic004G014000 Sobic004G014000 Sobic002G273100--Sobic004G014000 Sobic006G246100 Sobic006G246100 Sobic002G273100--Sobic006G246100 Sobic004G035200 Sobic004G035200 Sobic002G273100--Sobic004G035200 Sobic001G061101 Sobic001G061101 Sobic002G273100--Sobic001G061101 Sobic001G530350 Sobic001G530350 Sobic002G273100--Sobic001G530350 Sobic008G086401 Sobic008G086401 Sobic006G212000--Sobic008G086401 Sobic002G293900 Sobic002G293900 Sobic006G212000--Sobic002G293900 Sobic003G222400 Sobic003G222400 Sobic006G212000--Sobic003G222400 Sobic004G357900 Sobic004G357900 Sobic006G212000--Sobic004G357900 Sobic002G120200 Sobic002G120200 Sobic006G212000--Sobic002G120200 Sobic004G356600 Sobic004G356600 Sobic006G212000--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic006G212000--Sobic002G034400 Sobic006G212000--Sobic003G022800 Sobic003G365400 Sobic003G365400 Sobic006G212000--Sobic003G365400
Octagon: transcription factors


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