Gene annotation
Transcriptome id Sobic.006G212000.1
Synonym EMB2217, Sb06g028250
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6PN57
Pfam PF13812 PF01535
Panther DB PTHR24015 PTHR24015:SF326
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79490 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g52290.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009821
Brachypodium KQJ84548
Barley HORVU2Hr1G099330.12 , HORVU2Hr1G099330.13 , HORVU2Hr1G099330.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G086401 - -
2 Sobic.002G293900 mitochondrial glycoprotein, putative, expressed -
3 Sobic.003G222400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.004G357900 GHMP kinases ATP-binding protein, putative, expressed K00872: homoserine kinase
5 Sobic.002G120200 pentatricopeptide, putative, expressed -
6 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G034400 expressed protein -
8 Sobic.003G022800 ribosomal protein L23 family protein, putative, expressed K02892: RP-L23, MRPL23, large subunit ribosomal protein L23
9 Sobic.003G365400 DUF584 domain containing protein, putative, expressed -
10 Sobic.002G200500 pentatricopeptide, putative, expressed -
11 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
12 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.001G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
14 Sobic.002G005700 - -
15 Sobic.001G172800 RNA recognition motif containing protein, putative, expressed K09564: peptidyl-prolyl isomerase E (cyclophilin E)
16 Sobic.001G267266 - -
17 Sobic.005G232000 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
18 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
19 Sobic.007G085350 - -
20 Sobic.004G205200 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic006G212000 Sobic006G212000 Sobic008G086401 Sobic008G086401 Sobic006G212000--Sobic008G086401 Sobic002G293900 Sobic002G293900 Sobic006G212000--Sobic002G293900 Sobic003G222400 Sobic003G222400 Sobic006G212000--Sobic003G222400 Sobic004G357900 Sobic004G357900 Sobic006G212000--Sobic004G357900 Sobic002G120200 Sobic002G120200 Sobic006G212000--Sobic002G120200 Sobic004G356600 Sobic004G356600 Sobic006G212000--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic006G212000--Sobic002G034400 Sobic003G022800 Sobic003G022800 Sobic006G212000--Sobic003G022800 Sobic003G365400 Sobic003G365400 Sobic006G212000--Sobic003G365400 Sobic008G086401--Sobic003G022800 Sobic008G086401--Sobic006G212000 Sobic008G086401--Sobic004G357900 Sobic008G086401--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic008G086401--Sobic005G097700 Sobic001G256900 Sobic001G256900 Sobic008G086401--Sobic001G256900 Sobic008G086401--Sobic003G222400 Sobic009G070900 Sobic009G070900 Sobic008G086401--Sobic009G070900 Sobic007G169000 Sobic007G169000 Sobic008G086401--Sobic007G169000 Sobic008G028500 Sobic008G028500 Sobic002G293900--Sobic008G028500 Sobic002G276700 Sobic002G276700 Sobic002G293900--Sobic002G276700 Sobic001G429100 Sobic001G429100 Sobic002G293900--Sobic001G429100 Sobic005G232000 Sobic005G232000 Sobic002G293900--Sobic005G232000 SobicK044200 SobicK044200 Sobic002G293900--SobicK044200 Sobic010G189800 Sobic010G189800 Sobic002G293900--Sobic010G189800 Sobic009G154000 Sobic009G154000 Sobic002G293900--Sobic009G154000 Sobic010G114500 Sobic010G114500 Sobic002G293900--Sobic010G114500 Sobic007G013500 Sobic007G013500 Sobic002G293900--Sobic007G013500 Sobic006G272450 Sobic006G272450 Sobic003G222400--Sobic006G272450 Sobic002G356700 Sobic002G356700 Sobic003G222400--Sobic002G356700 Sobic003G222400--Sobic009G070900 Sobic001G042400 Sobic001G042400 Sobic003G222400--Sobic001G042400 Sobic010G256433 Sobic010G256433 Sobic003G222400--Sobic010G256433 Sobic007G085350 Sobic007G085350 Sobic003G222400--Sobic007G085350 Sobic009G233600 Sobic009G233600 Sobic003G222400--Sobic009G233600 Sobic003G222400--Sobic004G356600 Sobic003G222400--Sobic002G034400 Sobic004G357900--Sobic008G086401 Sobic004G357900--Sobic006G212000 Sobic004G357900--Sobic002G120200 Sobic004G357900--Sobic001G256900 Sobic001G362400 Sobic001G362400 Sobic004G357900--Sobic001G362400 Sobic004G357900--Sobic003G022800 Sobic010G153532 Sobic010G153532 Sobic004G357900--Sobic010G153532 Sobic003G219400 Sobic003G219400 Sobic004G357900--Sobic003G219400 Sobic005G112632 Sobic005G112632 Sobic004G357900--Sobic005G112632 Sobic006G146900 Sobic006G146900 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G200500 Sobic002G200500 Sobic002G120200--Sobic002G200500 Sobic002G120200--Sobic004G356600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic006G090201 Sobic006G090201 Sobic004G356600--Sobic006G090201 Sobic007G072901 Sobic007G072901 Sobic004G356600--Sobic007G072901 Sobic009G010800 Sobic009G010800 Sobic004G356600--Sobic009G010800 Sobic001G361500 Sobic001G361500 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic006G185400 Sobic006G185400 Sobic004G356600--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic004G356600--Sobic003G245700 Sobic002G034400--Sobic004G356600 Sobic002G034400--Sobic005G097700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic002G034400--Sobic006G090201 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic002G034400--Sobic003G245700 Sobic003G022800--Sobic007G169000 Sobic010G045200 Sobic010G045200 Sobic003G022800--Sobic010G045200 Sobic003G022800--Sobic004G356600 Sobic003G022800--Sobic007G085350 Sobic003G022800--Sobic008G086401 Sobic009G167300 Sobic009G167300 Sobic003G022800--Sobic009G167300 Sobic003G201300 Sobic003G201300 Sobic003G022800--Sobic003G201300 Sobic009G116766 Sobic009G116766 Sobic003G022800--Sobic009G116766 Sobic005G087600 Sobic005G087600 Sobic003G022800--Sobic005G087600 Sobic003G365400--Sobic001G429100 Sobic003G365400--Sobic010G189800 Sobic006G139600 Sobic006G139600 Sobic003G365400--Sobic006G139600 Sobic003G365400--Sobic007G013500 Sobic010G018800 Sobic010G018800 Sobic003G365400--Sobic010G018800 Sobic004G300500 Sobic004G300500 Sobic003G365400--Sobic004G300500 Sobic001G362800 Sobic001G362800 Sobic003G365400--Sobic001G362800 Sobic004G192700 Sobic004G192700 Sobic003G365400--Sobic004G192700 Sobic004G275500 Sobic004G275500 Sobic003G365400--Sobic004G275500
Octagon: transcription factors


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