Gene annotation
Transcriptome id Sobic.002G200500.4,Sobic.002G200500.6,Sobic.002G200500.7,Sobic.002G200500.5,Sobic.002G200500.3
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W538
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF764
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74600 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os09g24680.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a046957
Brachypodium KQJ90223
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G200500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
2 Sobic.002G120200 pentatricopeptide, putative, expressed -
3 Sobic.001G362400 PPR repeat containing protein, expressed -
4 Sobic.003G222400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.006G240300 expressed protein K10882: EME1, crossover junction endonuclease EME1
6 Sobic.004G339000 TBC domain containing protein, expressed -
7 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
8 Sobic.010G256433 - -
9 Sobic.002G034400 expressed protein -
10 Sobic.006G212000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G042400 expressed protein -
12 Sobic.003G264000 cytidylyltransferase domain containing protein, expressed -
13 Sobic.002G342300 exostosin family domain containing protein, expressed -
14 Sobic.002G181200 expressed protein -
15 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
16 Sobic.002G237700 expressed protein -
17 Sobic.001G478900 pentatricopeptide, putative, expressed -
18 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G200500 Sobic002G200500 Sobic006G146900 Sobic006G146900 Sobic002G200500--Sobic006G146900 Sobic002G120200 Sobic002G120200 Sobic002G200500--Sobic002G120200 Sobic001G362400 Sobic001G362400 Sobic002G200500--Sobic001G362400 Sobic003G222400 Sobic003G222400 Sobic002G200500--Sobic003G222400 Sobic006G240300 Sobic006G240300 Sobic002G200500--Sobic006G240300 Sobic004G339000 Sobic004G339000 Sobic002G200500--Sobic004G339000 Sobic010G018800 Sobic010G018800 Sobic002G200500--Sobic010G018800 Sobic010G256433 Sobic010G256433 Sobic002G200500--Sobic010G256433 Sobic002G034400 Sobic002G034400 Sobic002G200500--Sobic002G034400 Sobic006G146900--Sobic002G120200 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G146900--Sobic006G240300 Sobic003G182100 Sobic003G182100 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic009G233600 Sobic009G233600 Sobic006G146900--Sobic009G233600 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G120200--Sobic002G200500 Sobic004G356600 Sobic004G356600 Sobic002G120200--Sobic004G356600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic001G362400--Sobic002G034400 Sobic001G362400--Sobic002G120200 Sobic007G043200 Sobic007G043200 Sobic001G362400--Sobic007G043200 Sobic001G362400--Sobic003G222400 Sobic001G419900 Sobic001G419900 Sobic001G362400--Sobic001G419900 Sobic001G134600 Sobic001G134600 Sobic001G362400--Sobic001G134600 Sobic001G362400--Sobic002G200500 Sobic001G362400--Sobic004G356600 Sobic001G362400--Sobic006G146900 Sobic006G272450 Sobic006G272450 Sobic003G222400--Sobic006G272450 Sobic002G356700 Sobic002G356700 Sobic003G222400--Sobic002G356700 Sobic009G070900 Sobic009G070900 Sobic003G222400--Sobic009G070900 Sobic001G042400 Sobic001G042400 Sobic003G222400--Sobic001G042400 Sobic003G222400--Sobic010G256433 Sobic007G085350 Sobic007G085350 Sobic003G222400--Sobic007G085350 Sobic003G222400--Sobic009G233600 Sobic003G222400--Sobic004G356600 Sobic003G222400--Sobic002G034400 Sobic006G240300--Sobic002G237700 Sobic010G260800 Sobic010G260800 Sobic006G240300--Sobic010G260800 Sobic003G273800 Sobic003G273800 Sobic006G240300--Sobic003G273800 Sobic006G179200 Sobic006G179200 Sobic006G240300--Sobic006G179200 Sobic006G240300--Sobic006G146900 Sobic002G362600 Sobic002G362600 Sobic006G240300--Sobic002G362600 Sobic005G210600 Sobic005G210600 Sobic006G240300--Sobic005G210600 Sobic003G315700 Sobic003G315700 Sobic006G240300--Sobic003G315700 Sobic007G153400 Sobic007G153400 Sobic006G240300--Sobic007G153400 Sobic004G339000--Sobic001G042400 Sobic004G339000--Sobic010G018800 Sobic003G051800 Sobic003G051800 Sobic004G339000--Sobic003G051800 Sobic004G339000--Sobic010G256433 Sobic004G339000--Sobic003G222400 Sobic004G339000--Sobic002G200500 Sobic009G236700 Sobic009G236700 Sobic004G339000--Sobic009G236700 Sobic004G082000 Sobic004G082000 Sobic004G339000--Sobic004G082000 Sobic004G339000--Sobic006G272450 Sobic003G365400 Sobic003G365400 Sobic010G018800--Sobic003G365400 Sobic010G018800--Sobic010G256433 Sobic010G018800--Sobic003G222400 Sobic002G254600 Sobic002G254600 Sobic010G018800--Sobic002G254600 Sobic010G018800--Sobic001G042400 Sobic010G018800--Sobic004G339000 Sobic005G160900 Sobic005G160900 Sobic010G018800--Sobic005G160900 Sobic010G018800--Sobic007G085350 Sobic010G018800--Sobic002G200500 Sobic010G256433--Sobic001G042400 Sobic010G256433--Sobic009G236700 Sobic010G256433--Sobic003G222400 Sobic010G256433--Sobic004G082000 Sobic010G256433--Sobic006G272450 Sobic010G256433--Sobic009G070900 Sobic007G213200 Sobic007G213200 Sobic010G256433--Sobic007G213200 Sobic005G138900 Sobic005G138900 Sobic010G256433--Sobic005G138900 Sobic010G256433--Sobic010G018800 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700
Octagon: transcription factors


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