Gene annotation
Transcriptome id Sobic.003G264000.2,Sobic.003G264000.1
Synonym Sb03g031740
Functional annotation cytidylyltransferase domain containing protein, expressed
UniProt C5XGW8
Pfam PF01467
Panther DB PTHR31285 PTHR31285:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009058; biosynthetic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G01220 : Nucleotidylyl transferase superfamily protein
RAP-DB (Rice) LOC_Os01g49670.1 : cytidylyltransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038868
Brachypodium KQK09266 , PNT72618
Barley HORVU3Hr1G064230.16 , HORVU3Hr1G064230.17 , HORVU3Hr1G064230.14 , HORVU3Hr1G064230.15 , HORVU3Hr1G064230.12 , HORVU3Hr1G064230.13 , HORVU3Hr1G064230.10 , HORVU3Hr1G064230.11 , HORVU3Hr1G064230.4 , HORVU3Hr1G064230.5 , HORVU3Hr1G064230.6 , HORVU3Hr1G064230.1 , HORVU3Hr1G064230.2 , HORVU3Hr1G064230.3 , HORVU3Hr1G064230.9
Wheat TraesCS3A02G261400 , TraesCS3A02G261400 , TraesCS3A02G261400 , TraesCS3B02G294600 , TraesCS3D02G261500 , TraesCS3D02G261500 , TraesCS3D02G261500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G264000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
2 Sobic.002G034400 expressed protein -
3 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
4 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
5 Sobic.001G362400 PPR repeat containing protein, expressed -
6 Sobic.002G200500 pentatricopeptide, putative, expressed -
7 Sobic.001G267266 - -
8 Sobic.002G052500 - -
9 Sobic.002G120200 pentatricopeptide, putative, expressed -
10 Sobic.008G078600 NADP-dependent oxidoreductase, putative, expressed -
11 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
12 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.001G451200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
14 Sobic.003G059200 single myb histone, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
16 Sobic.001G339900 - -
17 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
18 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
19 Sobic.009G070900 - -
20 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39


Gene co-expression network
sample Sobic003G264000 Sobic003G264000 Sobic008G168000 Sobic008G168000 Sobic003G264000--Sobic008G168000 Sobic002G034400 Sobic002G034400 Sobic003G264000--Sobic002G034400 Sobic007G043200 Sobic007G043200 Sobic003G264000--Sobic007G043200 Sobic003G219400 Sobic003G219400 Sobic003G264000--Sobic003G219400 Sobic001G362400 Sobic001G362400 Sobic003G264000--Sobic001G362400 Sobic002G200500 Sobic002G200500 Sobic003G264000--Sobic002G200500 Sobic001G267266 Sobic001G267266 Sobic003G264000--Sobic001G267266 Sobic002G052500 Sobic002G052500 Sobic003G264000--Sobic002G052500 Sobic002G120200 Sobic002G120200 Sobic003G264000--Sobic002G120200 Sobic001G134600 Sobic001G134600 Sobic008G168000--Sobic001G134600 Sobic001G339900 Sobic001G339900 Sobic008G168000--Sobic001G339900 Sobic009G070900 Sobic009G070900 Sobic008G168000--Sobic009G070900 Sobic001G378550 Sobic001G378550 Sobic008G168000--Sobic001G378550 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic001G178200 Sobic001G178200 Sobic008G168000--Sobic001G178200 Sobic008G168000--Sobic007G043200 Sobic006G272450 Sobic006G272450 Sobic008G168000--Sobic006G272450 Sobic004G356600 Sobic004G356600 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic006G260600 Sobic006G260600 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic007G138300 Sobic007G138300 Sobic007G043200--Sobic007G138300 Sobic007G043200--Sobic001G134600 Sobic007G043200--Sobic008G168000 Sobic007G033200 Sobic007G033200 Sobic007G043200--Sobic007G033200 Sobic007G043200--Sobic001G362400 Sobic001G419900 Sobic001G419900 Sobic007G043200--Sobic001G419900 Sobic007G043200--Sobic003G264000 Sobic001G418650 Sobic001G418650 Sobic007G043200--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G043200--Sobic002G364000 Sobic010G153532 Sobic010G153532 Sobic003G219400--Sobic010G153532 Sobic004G074200 Sobic004G074200 Sobic003G219400--Sobic004G074200 Sobic004G078300 Sobic004G078300 Sobic003G219400--Sobic004G078300 Sobic003G219400--Sobic002G034400 Sobic007G085350 Sobic007G085350 Sobic003G219400--Sobic007G085350 Sobic003G219400--Sobic001G134600 Sobic007G017400 Sobic007G017400 Sobic003G219400--Sobic007G017400 Sobic003G219400--Sobic003G264000 Sobic003G219400--Sobic001G419900 Sobic001G362400--Sobic002G034400 Sobic001G362400--Sobic002G120200 Sobic001G362400--Sobic007G043200 Sobic003G222400 Sobic003G222400 Sobic001G362400--Sobic003G222400 Sobic001G362400--Sobic001G419900 Sobic001G362400--Sobic001G134600 Sobic001G362400--Sobic002G200500 Sobic001G362400--Sobic004G356600 Sobic006G146900 Sobic006G146900 Sobic001G362400--Sobic006G146900 Sobic002G200500--Sobic006G146900 Sobic002G200500--Sobic002G120200 Sobic002G200500--Sobic001G362400 Sobic002G200500--Sobic003G222400 Sobic006G240300 Sobic006G240300 Sobic002G200500--Sobic006G240300 Sobic004G339000 Sobic004G339000 Sobic002G200500--Sobic004G339000 Sobic010G018800 Sobic010G018800 Sobic002G200500--Sobic010G018800 Sobic010G256433 Sobic010G256433 Sobic002G200500--Sobic010G256433 Sobic002G200500--Sobic002G034400 Sobic002G302100 Sobic002G302100 Sobic001G267266--Sobic002G302100 Sobic001G267266--Sobic001G049000 Sobic001G267266--Sobic002G004400 Sobic006G053800 Sobic006G053800 Sobic001G267266--Sobic006G053800 Sobic001G267266--Sobic004G356600 Sobic001G267266--Sobic002G034400 Sobic001G267266--Sobic005G097700 Sobic003G221300 Sobic003G221300 Sobic001G267266--Sobic003G221300 Sobic001G267266--Sobic006G228400 Sobic007G072901 Sobic007G072901 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic003G343100 Sobic003G343100 Sobic002G052500--Sobic003G343100 Sobic008G023500 Sobic008G023500 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic006G185400 Sobic006G185400 Sobic002G052500--Sobic006G185400 Sobic009G010800 Sobic009G010800 Sobic002G052500--Sobic009G010800 Sobic003G178200 Sobic003G178200 Sobic002G052500--Sobic003G178200 Sobic004G330500 Sobic004G330500 Sobic002G052500--Sobic004G330500 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic002G120200--Sobic006G260600 Sobic001G451200 Sobic001G451200 Sobic002G120200--Sobic001G451200 Sobic002G120200--Sobic002G200500 Sobic002G120200--Sobic004G356600 Sobic009G233600 Sobic009G233600 Sobic002G120200--Sobic009G233600 Sobic006G073150 Sobic006G073150 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.