Gene annotation
Transcriptome id Sobic.001G451200.1
Synonym Sb01g042420
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat containing protein, expressed
UniProt A0A1B6QPJ0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF342
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08310 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g24930.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a001375
Brachypodium KQK06909 , KQK06910
Barley HORVU7Hr1G034050.19 , HORVU7Hr1G034050.14 , HORVU7Hr1G034050.17 , HORVU7Hr1G034050.16 , HORVU7Hr1G034050.11 , HORVU7Hr1G034050.10 , HORVU7Hr1G034050.13 , HORVU7Hr1G034050.20 , HORVU7Hr1G034050.21 , HORVU7Hr1G034050.22 , HORVU7Hr1G034050.23 , HORVU7Hr1G034050.9 , HORVU7Hr1G034050.8 , HORVU7Hr1G034050.1 , HORVU7Hr1G034050.3 , HORVU7Hr1G034050.5 , HORVU7Hr1G034050.4 , HORVU7Hr1G034050.7 , HORVU7Hr1G034050.6 , HORVU7Hr1G034050.18 , HORVU7Hr1G034050.12
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G073150 - -
2 Sobic.001G267266 - -
3 Sobic.002G120200 pentatricopeptide, putative, expressed -
4 Sobic.007G072800 OsFBX275 - F-box domain containing protein, expressed -
5 Sobic.009G213300 OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed -
6 Sobic.010G153532 - -
7 Sobic.002G034400 expressed protein -
8 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
9 Sobic.003G221300 - -
10 Sobic.003G048700 AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
11 Sobic.008G061701 - -
12 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
13 Sobic.002G425800 protein transport protein, putative, expressed -
14 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
15 Sobic.003G311400 - -
16 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
17 Sobic.006G053800 LGC1, putative, expressed -
18 Sobic.002G416200 - -
19 Sobic.005G097700 - -
20 Sobic.004G074200 abhydrolase domain-containing protein FAM108C1, putative, expressed -


Gene co-expression network
sample Sobic001G451200 Sobic001G451200 Sobic006G073150 Sobic006G073150 Sobic001G451200--Sobic006G073150 Sobic001G267266 Sobic001G267266 Sobic001G451200--Sobic001G267266 Sobic002G120200 Sobic002G120200 Sobic001G451200--Sobic002G120200 Sobic007G072800 Sobic007G072800 Sobic001G451200--Sobic007G072800 Sobic009G213300 Sobic009G213300 Sobic001G451200--Sobic009G213300 Sobic010G153532 Sobic010G153532 Sobic001G451200--Sobic010G153532 Sobic002G034400 Sobic002G034400 Sobic001G451200--Sobic002G034400 Sobic001G419900 Sobic001G419900 Sobic001G451200--Sobic001G419900 Sobic003G221300 Sobic003G221300 Sobic001G451200--Sobic003G221300 Sobic006G073150--Sobic001G451200 Sobic006G073150--Sobic007G072800 Sobic002G416200 Sobic002G416200 Sobic006G073150--Sobic002G416200 Sobic006G073150--Sobic001G267266 Sobic003G048700 Sobic003G048700 Sobic006G073150--Sobic003G048700 Sobic003G290600 Sobic003G290600 Sobic006G073150--Sobic003G290600 Sobic002G018901 Sobic002G018901 Sobic006G073150--Sobic002G018901 Sobic006G073150--Sobic002G120200 Sobic006G073150--Sobic010G153532 Sobic002G302100 Sobic002G302100 Sobic001G267266--Sobic002G302100 Sobic001G049000 Sobic001G049000 Sobic001G267266--Sobic001G049000 Sobic002G004400 Sobic002G004400 Sobic001G267266--Sobic002G004400 Sobic006G053800 Sobic006G053800 Sobic001G267266--Sobic006G053800 Sobic004G356600 Sobic004G356600 Sobic001G267266--Sobic004G356600 Sobic001G267266--Sobic002G034400 Sobic005G097700 Sobic005G097700 Sobic001G267266--Sobic005G097700 Sobic001G267266--Sobic003G221300 Sobic006G228400 Sobic006G228400 Sobic001G267266--Sobic006G228400 Sobic006G146900 Sobic006G146900 Sobic002G120200--Sobic006G146900 Sobic002G120200--Sobic002G034400 Sobic006G260600 Sobic006G260600 Sobic002G120200--Sobic006G260600 Sobic002G120200--Sobic001G451200 Sobic002G200500 Sobic002G200500 Sobic002G120200--Sobic002G200500 Sobic002G120200--Sobic004G356600 Sobic009G233600 Sobic009G233600 Sobic002G120200--Sobic009G233600 Sobic002G120200--Sobic006G073150 Sobic006G271100 Sobic006G271100 Sobic002G120200--Sobic006G271100 Sobic007G072800--Sobic006G073150 Sobic002G108600 Sobic002G108600 Sobic007G072800--Sobic002G108600 Sobic007G072800--Sobic003G221300 Sobic007G072800--Sobic001G451200 Sobic003G060400 Sobic003G060400 Sobic007G072800--Sobic003G060400 Sobic006G204200 Sobic006G204200 Sobic007G072800--Sobic006G204200 Sobic007G072800--Sobic009G213300 Sobic010G146200 Sobic010G146200 Sobic007G072800--Sobic010G146200 Sobic006G249000 Sobic006G249000 Sobic007G072800--Sobic006G249000 Sobic002G425800 Sobic002G425800 Sobic009G213300--Sobic002G425800 Sobic009G213300--Sobic001G451200 Sobic008G163700 Sobic008G163700 Sobic009G213300--Sobic008G163700 Sobic009G213300--Sobic007G072800 Sobic009G213300--Sobic006G204200 Sobic003G408800 Sobic003G408800 Sobic009G213300--Sobic003G408800 Sobic009G213300--Sobic003G060400 Sobic001G017900 Sobic001G017900 Sobic009G213300--Sobic001G017900 Sobic007G159800 Sobic007G159800 Sobic009G213300--Sobic007G159800 Sobic004G074200 Sobic004G074200 Sobic010G153532--Sobic004G074200 Sobic009G114600 Sobic009G114600 Sobic010G153532--Sobic009G114600 Sobic002G175550 Sobic002G175550 Sobic010G153532--Sobic002G175550 Sobic006G004000 Sobic006G004000 Sobic010G153532--Sobic006G004000 Sobic010G153532--Sobic005G097700 Sobic003G219400 Sobic003G219400 Sobic010G153532--Sobic003G219400 Sobic010G153532--Sobic006G073150 Sobic010G153532--Sobic001G451200 Sobic010G153532--Sobic003G221300 Sobic002G034400--Sobic004G356600 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic002G034400--Sobic006G228400 Sobic002G052500 Sobic002G052500 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic002G034400--Sobic006G260600 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic001G134600 Sobic001G134600 Sobic001G419900--Sobic001G134600 Sobic001G419900--Sobic002G034400 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G378550 Sobic001G378550 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic009G070900 Sobic009G070900 Sobic001G419900--Sobic009G070900 Sobic001G419900--Sobic002G175550 Sobic003G221300--Sobic005G097700 Sobic003G221300--Sobic002G004400 Sobic003G221300--Sobic001G267266 Sobic003G221300--Sobic002G175550 Sobic007G210400 Sobic007G210400 Sobic003G221300--Sobic007G210400 Sobic003G221300--Sobic002G034400 Sobic003G221300--Sobic006G228400 Sobic010G145200 Sobic010G145200 Sobic003G221300--Sobic010G145200 Sobic007G085350 Sobic007G085350 Sobic003G221300--Sobic007G085350
Octagon: transcription factors


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