Gene annotation
Transcriptome id Sobic.001G134600.1,Sobic.001G134600.2,Sobic.001G134600.3
Synonym Sb01g011760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA methyltransferase, TrmH family protein, putative, expressed
UniProt C5WPK7 , A0A1Z5S5V7 , A0A1Z5S5H2
Pfam PF00588
Panther DB PTHR12029
NCBI CDD KOG2506; SpoU rRNA Methylase family protein
KEGG Orthology K03437; RNA methyltransferase, TrmH family
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G38020 : tRNA/rRNA methyltransferase (SpoU) family protein
RAP-DB (Rice) LOC_Os03g48050.1 : RNA methyltransferase, TrmH family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007640 , Zm00025a017096
Brachypodium PNT74302 , KQK13751 , KQK13752
Barley HORVU4Hr1G004270.11 , HORVU4Hr1G004270.10 , HORVU4Hr1G004270.12 , HORVU4Hr1G004270.9 , HORVU4Hr1G004270.8 , HORVU4Hr1G004270.5 , HORVU4Hr1G004270.4 , HORVU4Hr1G004270.7 , HORVU4Hr1G004270.6 , HORVU4Hr1G004270.1 , HORVU4Hr1G004270.3 , HORVU4Hr1G004270.2
Wheat TraesCS4D02G026200 , TraesCS4B02G028600 , TraesCS4D02G026200 , TraesCS4A02G284500 , TraesCS4B02G028600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G378550 - -
2 Sobic.002G052500 - -
3 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
5 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G267266 - -
7 Sobic.006G090201 - -
8 Sobic.003G343100 expressed protein -
9 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
10 Sobic.002G034400 expressed protein -
11 Sobic.003G245700 3-5 exonuclease domain-containing protein, putative, expressed -
12 Sobic.006G185400 - -
13 Sobic.009G194600 expressed protein -
14 Sobic.004G330500 expressed protein -
15 Sobic.005G189400 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
17 Sobic.007G072901 - -
18 Sobic.006G272450 - -
19 Sobic.006G209100 - -
20 Sobic.007G152200 cytokinesis negative regulator RCP1, putative, expressed -


Gene co-expression network
sample Sobic001G134600 Sobic001G134600 Sobic001G378550 Sobic001G378550 Sobic001G134600--Sobic001G378550 Sobic002G052500 Sobic002G052500 Sobic001G134600--Sobic002G052500 Sobic001G419900 Sobic001G419900 Sobic001G134600--Sobic001G419900 Sobic001G049000 Sobic001G049000 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic006G185400 Sobic006G185400 Sobic001G378550--Sobic006G185400 Sobic004G330500 Sobic004G330500 Sobic001G378550--Sobic004G330500 Sobic001G378550--Sobic003G343100 Sobic007G152200 Sobic007G152200 Sobic001G378550--Sobic007G152200 Sobic005G189400 Sobic005G189400 Sobic001G378550--Sobic005G189400 Sobic005G037500 Sobic005G037500 Sobic001G378550--Sobic005G037500 Sobic002G205201 Sobic002G205201 Sobic001G378550--Sobic002G205201 Sobic001G361500 Sobic001G361500 Sobic001G378550--Sobic001G361500 Sobic006G209100 Sobic006G209100 Sobic001G378550--Sobic006G209100 Sobic007G072901 Sobic007G072901 Sobic002G052500--Sobic007G072901 Sobic003G245700 Sobic003G245700 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic008G023500 Sobic008G023500 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic002G052500--Sobic006G185400 Sobic009G010800 Sobic009G010800 Sobic002G052500--Sobic009G010800 Sobic003G178200 Sobic003G178200 Sobic002G052500--Sobic003G178200 Sobic002G052500--Sobic004G330500 Sobic001G419900--Sobic001G134600 Sobic002G034400 Sobic002G034400 Sobic001G419900--Sobic002G034400 Sobic005G097700 Sobic005G097700 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic009G070900 Sobic009G070900 Sobic001G419900--Sobic009G070900 Sobic002G175550 Sobic002G175550 Sobic001G419900--Sobic002G175550 Sobic001G049000--Sobic001G378550 Sobic001G049000--Sobic003G343100 Sobic008G078600 Sobic008G078600 Sobic001G049000--Sobic008G078600 Sobic002G004400 Sobic002G004400 Sobic001G049000--Sobic002G004400 Sobic007G210400 Sobic007G210400 Sobic001G049000--Sobic007G210400 Sobic001G049000--Sobic006G090201 Sobic010G014600 Sobic010G014600 Sobic001G049000--Sobic010G014600 Sobic001G049000--Sobic005G189400 Sobic001G049000--Sobic007G072901 Sobic004G356600--Sobic006G090201 Sobic004G356600--Sobic007G072901 Sobic004G356600--Sobic009G010800 Sobic004G356600--Sobic001G361500 Sobic003G423100 Sobic003G423100 Sobic004G356600--Sobic003G423100 Sobic003G357000 Sobic003G357000 Sobic004G356600--Sobic003G357000 Sobic009G164200 Sobic009G164200 Sobic004G356600--Sobic009G164200 Sobic004G356600--Sobic006G185400 Sobic004G356600--Sobic003G245700 Sobic002G302100 Sobic002G302100 Sobic001G267266--Sobic002G302100 Sobic001G267266--Sobic001G049000 Sobic001G267266--Sobic002G004400 Sobic006G053800 Sobic006G053800 Sobic001G267266--Sobic006G053800 Sobic001G267266--Sobic004G356600 Sobic001G267266--Sobic002G034400 Sobic001G267266--Sobic005G097700 Sobic003G221300 Sobic003G221300 Sobic001G267266--Sobic003G221300 Sobic006G228400 Sobic006G228400 Sobic001G267266--Sobic006G228400 Sobic006G090201--Sobic005G189400 Sobic006G090201--Sobic004G330500 Sobic006G090201--Sobic006G185400 Sobic006G090201--Sobic007G152200 Sobic006G090201--Sobic006G209100 Sobic006G090201--Sobic003G245700 Sobic006G090201--Sobic001G361500 Sobic006G090201--Sobic008G023500 Sobic006G090201--Sobic002G205201 Sobic010G275550 Sobic010G275550 Sobic003G343100--Sobic010G275550 Sobic003G343100--Sobic005G189400 Sobic003G343100--Sobic003G245700 Sobic003G343100--Sobic004G330500 Sobic003G343100--Sobic006G185400 Sobic003G343100--Sobic005G037500 Sobic003G343100--Sobic008G023500 Sobic003G343100--Sobic006G090201 Sobic002G037000 Sobic002G037000 Sobic003G343100--Sobic002G037000 Sobic001G063900--Sobic009G010800 Sobic001G063900--Sobic007G210400 Sobic001G063900--Sobic002G052500 Sobic001G063900--Sobic007G072901 Sobic001G063900--Sobic004G356600 Sobic001G063900--Sobic001G361500 Sobic001G063900--Sobic003G245700 Sobic001G063900--Sobic003G178200 Sobic001G063900--Sobic003G343100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.