Gene annotation
Transcriptome id Sobic.008G168000.2,Sobic.008G168000.3,Sobic.008G168000.4,Sobic.008G168000.1
Synonym Sb08g021340
Functional annotation Methyltransferase small domain containing protein, expressed
UniProt C5YRY2 , A0A1Z5R7A4 , C5YRX4
Pfam PF12847
Panther DB PTHR18895 PTHR18895:SF74
NCBI CDD KOG2904; Predicted methyltransferase
KEGG Orthology K02493; hemK, prmC, release factor glutamine methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64150 : RNA methyltransferase family protein
RAP-DB (Rice) LOC_Os12g41830.1 : Methyltransferase small domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004678
Brachypodium PNT62341
Barley HORVU5Hr1G011020.13 , HORVU5Hr1G011020.12 , HORVU5Hr1G011020.11 , HORVU5Hr1G011020.10 , HORVU5Hr1G011020.9 , HORVU5Hr1G011020.8 , HORVU5Hr1G011020.7 , HORVU5Hr1G011020.6 , HORVU5Hr1G011020.5 , HORVU5Hr1G011020.4 , HORVU5Hr1G011020.3 , HORVU5Hr1G011020.2
Wheat TraesCS5D02G055300 , TraesCS5A02G045200 , TraesCS5B02G049400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
2 Sobic.001G339900 - -
3 Sobic.009G070900 - -
4 Sobic.001G378550 - -
5 Sobic.002G052500 - -
6 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
7 Sobic.001G178200 - -
8 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
9 Sobic.006G272450 - -
10 Sobic.008G078600 NADP-dependent oxidoreductase, putative, expressed -
11 Sobic.007G033200 fringe-related protein, putative, expressed -
12 Sobic.002G302100 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
13 Sobic.002G034400 expressed protein -
14 Sobic.003G343100 expressed protein -
15 Sobic.001G267266 - -
16 Sobic.010G004001 - -
17 Sobic.009G194600 expressed protein -
18 Sobic.001G042400 expressed protein -
19 Sobic.006G090201 - -
20 Sobic.008G178400 OsFBX213 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic008G168000 Sobic008G168000 Sobic001G134600 Sobic001G134600 Sobic008G168000--Sobic001G134600 Sobic001G339900 Sobic001G339900 Sobic008G168000--Sobic001G339900 Sobic009G070900 Sobic009G070900 Sobic008G168000--Sobic009G070900 Sobic001G378550 Sobic001G378550 Sobic008G168000--Sobic001G378550 Sobic002G052500 Sobic002G052500 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic001G178200 Sobic001G178200 Sobic008G168000--Sobic001G178200 Sobic007G043200 Sobic007G043200 Sobic008G168000--Sobic007G043200 Sobic006G272450 Sobic006G272450 Sobic008G168000--Sobic006G272450 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G419900 Sobic001G419900 Sobic001G134600--Sobic001G419900 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic001G339900--Sobic001G378550 Sobic001G339900--Sobic006G272450 Sobic001G339900--Sobic002G052500 Sobic009G116766 Sobic009G116766 Sobic001G339900--Sobic009G116766 Sobic003G245700 Sobic003G245700 Sobic001G339900--Sobic003G245700 Sobic008G078600 Sobic008G078600 Sobic001G339900--Sobic008G078600 Sobic009G010800 Sobic009G010800 Sobic001G339900--Sobic009G010800 Sobic006G185400 Sobic006G185400 Sobic001G339900--Sobic006G185400 Sobic001G361500 Sobic001G361500 Sobic001G339900--Sobic001G361500 Sobic009G070900--Sobic006G272450 Sobic009G070900--Sobic001G378550 Sobic009G070900--Sobic002G052500 Sobic008G023500 Sobic008G023500 Sobic009G070900--Sobic008G023500 Sobic009G070900--Sobic006G090201 Sobic009G070900--Sobic003G245700 Sobic009G164200 Sobic009G164200 Sobic009G070900--Sobic009G164200 Sobic002G356700 Sobic002G356700 Sobic009G070900--Sobic002G356700 Sobic009G070900--Sobic006G185400 Sobic001G378550--Sobic006G185400 Sobic004G330500 Sobic004G330500 Sobic001G378550--Sobic004G330500 Sobic001G378550--Sobic003G343100 Sobic007G152200 Sobic007G152200 Sobic001G378550--Sobic007G152200 Sobic005G189400 Sobic005G189400 Sobic001G378550--Sobic005G189400 Sobic005G037500 Sobic005G037500 Sobic001G378550--Sobic005G037500 Sobic002G205201 Sobic002G205201 Sobic001G378550--Sobic002G205201 Sobic001G378550--Sobic001G361500 Sobic006G209100 Sobic006G209100 Sobic001G378550--Sobic006G209100 Sobic007G072901 Sobic007G072901 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic002G052500--Sobic006G185400 Sobic002G052500--Sobic009G010800 Sobic003G178200 Sobic003G178200 Sobic002G052500--Sobic003G178200 Sobic002G052500--Sobic004G330500 Sobic001G049000--Sobic001G378550 Sobic001G049000--Sobic003G343100 Sobic001G049000--Sobic008G078600 Sobic002G004400 Sobic002G004400 Sobic001G049000--Sobic002G004400 Sobic007G210400 Sobic007G210400 Sobic001G049000--Sobic007G210400 Sobic001G049000--Sobic006G090201 Sobic010G014600 Sobic010G014600 Sobic001G049000--Sobic010G014600 Sobic001G049000--Sobic005G189400 Sobic001G049000--Sobic007G072901 Sobic006G080600 Sobic006G080600 Sobic001G178200--Sobic006G080600 Sobic001G178200--Sobic002G052500 Sobic005G208500 Sobic005G208500 Sobic001G178200--Sobic005G208500 Sobic001G178200--Sobic006G272450 Sobic001G178200--Sobic001G378550 Sobic010G244600 Sobic010G244600 Sobic001G178200--Sobic010G244600 Sobic001G184900 Sobic001G184900 Sobic001G178200--Sobic001G184900 Sobic001G178200--Sobic001G339900 Sobic009G125500 Sobic009G125500 Sobic001G178200--Sobic009G125500 Sobic007G138300 Sobic007G138300 Sobic007G043200--Sobic007G138300 Sobic007G043200--Sobic001G134600 Sobic007G043200--Sobic008G168000 Sobic007G033200 Sobic007G033200 Sobic007G043200--Sobic007G033200 Sobic001G362400 Sobic001G362400 Sobic007G043200--Sobic001G362400 Sobic007G043200--Sobic001G419900 Sobic003G264000 Sobic003G264000 Sobic007G043200--Sobic003G264000 Sobic001G418650 Sobic001G418650 Sobic007G043200--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G043200--Sobic002G364000 Sobic006G272450--Sobic009G164200 Sobic006G272450--Sobic008G023500 Sobic006G272450--Sobic006G090201 Sobic006G272450--Sobic009G010800 Sobic006G272450--Sobic009G070900 Sobic006G272450--Sobic006G185400 Sobic006G272450--Sobic003G245700 Sobic006G272450--Sobic004G330500 Sobic006G272450--Sobic005G189400
Octagon: transcription factors


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