Gene annotation
Transcriptome id Sobic.007G033200.1
Synonym Sb07g002850
Functional annotation fringe-related protein, putative, expressed
UniProt C5YN06
Pfam PF02434
Panther DB PTHR10811 PTHR10811:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT4G15240 : Protein of unknown function (DUF604)
RAP-DB (Rice) LOC_Os08g04300.1 : fringe-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a055267 , Zm00025a030160
Brachypodium KQJ94990
Barley -
Wheat TraesCS7B02G208500 , TraesCS7D02G305000 , TraesCS7A02G308200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
2 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
3 Sobic.007G138300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
4 Sobic.010G004001 - -
5 Sobic.001G178200 - -
6 Sobic.001G418650 - -
7 Sobic.001G184900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"Expressed protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659837)@expressed protein -
8 Sobic.007G203100 pentatricopeptide repeat protein, putative, expressed -
9 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
10 Sobic.010G244600 nifU, putative, expressed -
11 Sobic.001G339900 - -
12 Sobic.005G128100 acyl carrier protein, putative, expressed -
13 Sobic.006G074100 ctr copper transporter family protein, putative, expressed -
14 Sobic.002G343700 expressed protein -
15 Sobic.001G378550 - -
16 Sobic.006G127300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
18 Sobic.002G364000 myosin heavy chain-related, putative, expressed -
19 Sobic.009G070900 - -
20 Sobic.007G193800 serine/threonine-protein kinase RIO-like, putative, expressed K07178: RIO kinase 1


Gene co-expression network
sample Sobic007G033200 Sobic007G033200 Sobic008G168000 Sobic008G168000 Sobic007G033200--Sobic008G168000 Sobic007G043200 Sobic007G043200 Sobic007G033200--Sobic007G043200 Sobic007G138300 Sobic007G138300 Sobic007G033200--Sobic007G138300 Sobic010G004001 Sobic010G004001 Sobic007G033200--Sobic010G004001 Sobic001G178200 Sobic001G178200 Sobic007G033200--Sobic001G178200 Sobic001G418650 Sobic001G418650 Sobic007G033200--Sobic001G418650 Sobic001G184900 Sobic001G184900 Sobic007G033200--Sobic001G184900 Sobic007G203100 Sobic007G203100 Sobic007G033200--Sobic007G203100 Sobic001G134600 Sobic001G134600 Sobic007G033200--Sobic001G134600 Sobic008G168000--Sobic001G134600 Sobic001G339900 Sobic001G339900 Sobic008G168000--Sobic001G339900 Sobic009G070900 Sobic009G070900 Sobic008G168000--Sobic009G070900 Sobic001G378550 Sobic001G378550 Sobic008G168000--Sobic001G378550 Sobic002G052500 Sobic002G052500 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic008G168000--Sobic001G178200 Sobic008G168000--Sobic007G043200 Sobic006G272450 Sobic006G272450 Sobic008G168000--Sobic006G272450 Sobic007G043200--Sobic007G138300 Sobic007G043200--Sobic001G134600 Sobic007G043200--Sobic008G168000 Sobic007G043200--Sobic007G033200 Sobic001G362400 Sobic001G362400 Sobic007G043200--Sobic001G362400 Sobic001G419900 Sobic001G419900 Sobic007G043200--Sobic001G419900 Sobic003G264000 Sobic003G264000 Sobic007G043200--Sobic003G264000 Sobic007G043200--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G043200--Sobic002G364000 Sobic007G138300--Sobic007G043200 Sobic002G343700 Sobic002G343700 Sobic007G138300--Sobic002G343700 Sobic003G014100 Sobic003G014100 Sobic007G138300--Sobic003G014100 Sobic010G033000 Sobic010G033000 Sobic007G138300--Sobic010G033000 Sobic002G040300 Sobic002G040300 Sobic007G138300--Sobic002G040300 Sobic009G042200 Sobic009G042200 Sobic007G138300--Sobic009G042200 Sobic003G132600 Sobic003G132600 Sobic007G138300--Sobic003G132600 Sobic003G077400 Sobic003G077400 Sobic007G138300--Sobic003G077400 Sobic002G158800 Sobic002G158800 Sobic007G138300--Sobic002G158800 Sobic010G004001--Sobic002G052500 Sobic006G166300 Sobic006G166300 Sobic010G004001--Sobic006G166300 Sobic007G210400 Sobic007G210400 Sobic010G004001--Sobic007G210400 Sobic002G138500 Sobic002G138500 Sobic010G004001--Sobic002G138500 Sobic010G004001--Sobic008G168000 Sobic005G037500 Sobic005G037500 Sobic010G004001--Sobic005G037500 Sobic003G245700 Sobic003G245700 Sobic010G004001--Sobic003G245700 Sobic002G037000 Sobic002G037000 Sobic010G004001--Sobic002G037000 Sobic006G185400 Sobic006G185400 Sobic010G004001--Sobic006G185400 Sobic006G080600 Sobic006G080600 Sobic001G178200--Sobic006G080600 Sobic001G178200--Sobic002G052500 Sobic005G208500 Sobic005G208500 Sobic001G178200--Sobic005G208500 Sobic001G178200--Sobic006G272450 Sobic001G178200--Sobic001G378550 Sobic010G244600 Sobic010G244600 Sobic001G178200--Sobic010G244600 Sobic001G178200--Sobic001G184900 Sobic001G178200--Sobic001G339900 Sobic009G125500 Sobic009G125500 Sobic001G178200--Sobic009G125500 Sobic001G418650--Sobic001G339900 Sobic001G418650--Sobic009G070900 Sobic001G418650--Sobic001G178200 Sobic001G418650--Sobic001G378550 Sobic001G418650--Sobic006G272450 Sobic001G418650--Sobic001G134600 Sobic001G418650--Sobic002G052500 Sobic009G194600 Sobic009G194600 Sobic001G418650--Sobic009G194600 Sobic001G418650--Sobic003G245700 Sobic001G184900--Sobic001G178200 Sobic001G184900--Sobic010G004001 Sobic002G410050 Sobic002G410050 Sobic001G184900--Sobic002G410050 Sobic001G184900--Sobic005G037500 Sobic001G184900--Sobic002G052500 Sobic006G136900 Sobic006G136900 Sobic001G184900--Sobic006G136900 Sobic010G173550 Sobic010G173550 Sobic001G184900--Sobic010G173550 Sobic004G330500 Sobic004G330500 Sobic001G184900--Sobic004G330500 Sobic001G184900--Sobic006G185400 Sobic007G203100--Sobic010G244600 Sobic007G203100--Sobic001G178200 Sobic007G203100--Sobic008G168000 Sobic007G203100--Sobic001G134600 Sobic007G203100--Sobic001G378550 Sobic001G077100 Sobic001G077100 Sobic007G203100--Sobic001G077100 Sobic007G203100--Sobic009G070900 Sobic004G263300 Sobic004G263300 Sobic007G203100--Sobic004G263300 Sobic007G203100--Sobic001G419900 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G134600--Sobic001G419900 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.