Gene annotation
Transcriptome id Sobic.006G127300.1
Synonym Sb06g020740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PLP4
Pfam PF12638
Panther DB PTHR31750 PTHR31750:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G44000 : -
RAP-DB (Rice) LOC_Os04g59610.2 : expressed protein
MaizeGDB (Corn) Zm00025a010581
Brachypodium -
Barley HORVU2Hr1G127250.1 , HORVU2Hr1G127250.3
Wheat TraesCS2A02G560500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G127300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G128100 acyl carrier protein, putative, expressed -
2 Sobic.003G230400 50S ribosomal protein L31, putative, expressed K02909: RP-L31, large subunit ribosomal protein L31
3 Sobic.007G205500 expressed protein -
4 Sobic.007G204400 expressed protein -
5 Sobic.001G010100 ankyrin repeat domain containing protein, expressed -
6 Sobic.001G413600 expressed protein -
7 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
8 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.009G179800 - -
10 Sobic.009G091850 - -
11 Sobic.003G239300 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.003G433900 expressed protein -
13 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
14 Sobic.008G073200 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZF-HD protein dimerisation region containing protein, expressed -
15 Sobic.004G023400 expressed protein -
16 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
17 Sobic.002G152700 rhodanese-like, putative, expressed -
18 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
20 Sobic.010G277600 - -


Gene co-expression network
sample Sobic006G127300 Sobic006G127300 Sobic005G128100 Sobic005G128100 Sobic006G127300--Sobic005G128100 Sobic003G230400 Sobic003G230400 Sobic006G127300--Sobic003G230400 Sobic007G205500 Sobic007G205500 Sobic006G127300--Sobic007G205500 Sobic007G204400 Sobic007G204400 Sobic006G127300--Sobic007G204400 Sobic001G010100 Sobic001G010100 Sobic006G127300--Sobic001G010100 Sobic001G413600 Sobic001G413600 Sobic006G127300--Sobic001G413600 Sobic009G130700 Sobic009G130700 Sobic006G127300--Sobic009G130700 Sobic007G004600 Sobic007G004600 Sobic006G127300--Sobic007G004600 Sobic009G179800 Sobic009G179800 Sobic006G127300--Sobic009G179800 Sobic003G393800 Sobic003G393800 Sobic005G128100--Sobic003G393800 Sobic005G128100--Sobic009G179800 Sobic002G077000 Sobic002G077000 Sobic005G128100--Sobic002G077000 Sobic001G411300 Sobic001G411300 Sobic005G128100--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic005G128100--Sobic003G256200 Sobic002G343700 Sobic002G343700 Sobic005G128100--Sobic002G343700 Sobic003G246600 Sobic003G246600 Sobic005G128100--Sobic003G246600 Sobic001G427000 Sobic001G427000 Sobic005G128100--Sobic001G427000 Sobic003G132600 Sobic003G132600 Sobic005G128100--Sobic003G132600 Sobic009G043000 Sobic009G043000 Sobic003G230400--Sobic009G043000 Sobic001G417200 Sobic001G417200 Sobic003G230400--Sobic001G417200 Sobic007G052400 Sobic007G052400 Sobic003G230400--Sobic007G052400 Sobic010G042400 Sobic010G042400 Sobic003G230400--Sobic010G042400 Sobic006G067400 Sobic006G067400 Sobic003G230400--Sobic006G067400 Sobic008G171300 Sobic008G171300 Sobic003G230400--Sobic008G171300 Sobic003G002300 Sobic003G002300 Sobic003G230400--Sobic003G002300 Sobic006G093900 Sobic006G093900 Sobic003G230400--Sobic006G093900 Sobic001G519800 Sobic001G519800 Sobic003G230400--Sobic001G519800 Sobic002G299900 Sobic002G299900 Sobic007G205500--Sobic002G299900 Sobic004G309400 Sobic004G309400 Sobic007G205500--Sobic004G309400 Sobic007G205500--Sobic006G067400 Sobic007G205500--Sobic001G413600 Sobic004G020300 Sobic004G020300 Sobic007G205500--Sobic004G020300 Sobic002G227700 Sobic002G227700 Sobic007G205500--Sobic002G227700 Sobic006G021600 Sobic006G021600 Sobic007G205500--Sobic006G021600 Sobic007G004700 Sobic007G004700 Sobic007G205500--Sobic007G004700 Sobic001G314200 Sobic001G314200 Sobic007G205500--Sobic001G314200 Sobic010G244600 Sobic010G244600 Sobic007G204400--Sobic010G244600 Sobic004G072000 Sobic004G072000 Sobic007G204400--Sobic004G072000 Sobic005G208500 Sobic005G208500 Sobic007G204400--Sobic005G208500 Sobic006G204000 Sobic006G204000 Sobic007G204400--Sobic006G204000 Sobic007G204400--Sobic006G127300 Sobic003G264700 Sobic003G264700 Sobic007G204400--Sobic003G264700 Sobic009G125500 Sobic009G125500 Sobic007G204400--Sobic009G125500 Sobic004G023400 Sobic004G023400 Sobic007G204400--Sobic004G023400 Sobic009G237800 Sobic009G237800 Sobic007G204400--Sobic009G237800 Sobic003G433900 Sobic003G433900 Sobic001G010100--Sobic003G433900 Sobic004G249800 Sobic004G249800 Sobic001G010100--Sobic004G249800 Sobic009G030900 Sobic009G030900 Sobic001G010100--Sobic009G030900 Sobic004G175500 Sobic004G175500 Sobic001G010100--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic001G010100--Sobic003G387800 Sobic008G021300 Sobic008G021300 Sobic001G010100--Sobic008G021300 Sobic001G010100--Sobic001G314200 Sobic007G004800 Sobic007G004800 Sobic001G010100--Sobic007G004800 Sobic001G010100--Sobic002G227700 Sobic003G077400 Sobic003G077400 Sobic001G413600--Sobic003G077400 Sobic001G469933 Sobic001G469933 Sobic001G413600--Sobic001G469933 Sobic001G413600--Sobic009G030900 Sobic010G277600 Sobic010G277600 Sobic001G413600--Sobic010G277600 Sobic001G413600--Sobic006G021600 Sobic001G104800 Sobic001G104800 Sobic001G413600--Sobic001G104800 Sobic001G413600--Sobic007G052400 Sobic001G413600--Sobic006G067400 Sobic002G272100 Sobic002G272100 Sobic001G413600--Sobic002G272100 Sobic002G297300 Sobic002G297300 Sobic009G130700--Sobic002G297300 Sobic009G130700--Sobic009G179800 Sobic009G130700--Sobic003G433900 Sobic009G091800 Sobic009G091800 Sobic009G130700--Sobic009G091800 Sobic003G246400 Sobic003G246400 Sobic009G130700--Sobic003G246400 Sobic001G382100 Sobic001G382100 Sobic009G130700--Sobic001G382100 Sobic004G238500 Sobic004G238500 Sobic009G130700--Sobic004G238500 Sobic010G022100 Sobic010G022100 Sobic009G130700--Sobic010G022100 Sobic002G329600 Sobic002G329600 Sobic009G130700--Sobic002G329600 Sobic009G183700 Sobic009G183700 Sobic007G004600--Sobic009G183700 Sobic007G004600--Sobic010G277600 Sobic001G527000 Sobic001G527000 Sobic007G004600--Sobic001G527000 Sobic009G091850 Sobic009G091850 Sobic007G004600--Sobic009G091850 Sobic007G004600--Sobic009G030900 Sobic004G311100 Sobic004G311100 Sobic007G004600--Sobic004G311100 Sobic004G251500 Sobic004G251500 Sobic007G004600--Sobic004G251500 Sobic007G004600--Sobic003G433900 Sobic007G004600--Sobic003G387800 Sobic009G179800--Sobic009G130700 Sobic009G179800--Sobic003G393800 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic009G179800--Sobic001G411300 Sobic009G179800--Sobic001G382100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.