Gene annotation
Transcriptome id Sobic.004G023400.1
Synonym LPA2, Sb04g002080
Functional annotation expressed protein
UniProt C5XT56
Pfam -
Panther DB PTHR37385 PTHR37385:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51545 : low psii accumulation2
RAP-DB (Rice) LOC_Os02g03250.1 : expressed protein
MaizeGDB (Corn) Zm00025a018788
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G204500 expressed protein -
2 Sobic.003G264700 expressed protein -
3 Sobic.003G309700 decarboxylase, putative, expressed K01592: tyrosine decarboxylase
4 Sobic.003G132300 MYB family transcription factor, putative, expressed -
5 Sobic.007G204400 expressed protein -
6 Sobic.009G237800 expressed protein -
7 Sobic.006G127300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G179800 - -
9 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
10 Sobic.005G128100 acyl carrier protein, putative, expressed -
11 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.003G230400 50S ribosomal protein L31, putative, expressed K02909: RP-L31, large subunit ribosomal protein L31
13 Sobic.001G010100 ankyrin repeat domain containing protein, expressed -
14 Sobic.006G229300 receptor-like kinase, putative, expressed -
15 Sobic.004G072000 ribosome, putative, expressed -
16 Sobic.010G109200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
17 Sobic.001G147400 Ferredoxin(PubMedID : 26186930)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.004G132400 lectin-like receptor kinase, putative, expressed -
19 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
20 Sobic.002G077000 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G023400 Sobic004G023400 Sobic004G204500 Sobic004G204500 Sobic004G023400--Sobic004G204500 Sobic003G264700 Sobic003G264700 Sobic004G023400--Sobic003G264700 Sobic003G309700 Sobic003G309700 Sobic004G023400--Sobic003G309700 Sobic003G132300 Sobic003G132300 Sobic004G023400--Sobic003G132300 Sobic007G204400 Sobic007G204400 Sobic004G023400--Sobic007G204400 Sobic009G237800 Sobic009G237800 Sobic004G023400--Sobic009G237800 Sobic006G127300 Sobic006G127300 Sobic004G023400--Sobic006G127300 Sobic009G179800 Sobic009G179800 Sobic004G023400--Sobic009G179800 Sobic010G208000 Sobic010G208000 Sobic004G023400--Sobic010G208000 Sobic001G381900 Sobic001G381900 Sobic004G204500--Sobic001G381900 Sobic004G204500--Sobic004G023400 Sobic004G204500--Sobic010G208000 Sobic004G204500--Sobic003G264700 Sobic003G211500 Sobic003G211500 Sobic004G204500--Sobic003G211500 Sobic004G204500--Sobic009G237800 Sobic004G204500--Sobic003G132300 Sobic006G229300 Sobic006G229300 Sobic004G204500--Sobic006G229300 Sobic005G128100 Sobic005G128100 Sobic004G204500--Sobic005G128100 Sobic003G264700--Sobic004G023400 Sobic003G264700--Sobic004G204500 Sobic003G264700--Sobic007G204400 Sobic002G088200 Sobic002G088200 Sobic003G264700--Sobic002G088200 Sobic003G264700--Sobic003G309700 Sobic003G264700--Sobic009G237800 Sobic010G042400 Sobic010G042400 Sobic003G264700--Sobic010G042400 Sobic003G264700--Sobic001G381900 Sobic001G543500 Sobic001G543500 Sobic003G264700--Sobic001G543500 Sobic003G309700--Sobic004G023400 Sobic009G191300 Sobic009G191300 Sobic003G309700--Sobic009G191300 Sobic006G136500 Sobic006G136500 Sobic003G309700--Sobic006G136500 Sobic003G309700--Sobic003G264700 Sobic010G006350 Sobic010G006350 Sobic003G309700--Sobic010G006350 Sobic001G364100 Sobic001G364100 Sobic003G309700--Sobic001G364100 Sobic001G417200 Sobic001G417200 Sobic003G309700--Sobic001G417200 Sobic002G094800 Sobic002G094800 Sobic003G309700--Sobic002G094800 Sobic006G162200 Sobic006G162200 Sobic003G309700--Sobic006G162200 Sobic003G132300--Sobic006G229300 Sobic003G305300 Sobic003G305300 Sobic003G132300--Sobic003G305300 Sobic004G132400 Sobic004G132400 Sobic003G132300--Sobic004G132400 Sobic003G132300--Sobic003G211500 Sobic004G202600 Sobic004G202600 Sobic003G132300--Sobic004G202600 Sobic009G212000 Sobic009G212000 Sobic003G132300--Sobic009G212000 Sobic003G132300--Sobic009G179800 Sobic002G215000 Sobic002G215000 Sobic003G132300--Sobic002G215000 Sobic003G132300--Sobic004G023400 Sobic010G244600 Sobic010G244600 Sobic007G204400--Sobic010G244600 Sobic004G072000 Sobic004G072000 Sobic007G204400--Sobic004G072000 Sobic005G208500 Sobic005G208500 Sobic007G204400--Sobic005G208500 Sobic006G204000 Sobic006G204000 Sobic007G204400--Sobic006G204000 Sobic007G204400--Sobic006G127300 Sobic007G204400--Sobic003G264700 Sobic009G125500 Sobic009G125500 Sobic007G204400--Sobic009G125500 Sobic007G204400--Sobic004G023400 Sobic007G204400--Sobic009G237800 Sobic002G077000 Sobic002G077000 Sobic009G237800--Sobic002G077000 Sobic009G237800--Sobic004G204500 Sobic009G237800--Sobic004G023400 Sobic009G237800--Sobic007G204400 Sobic009G237800--Sobic005G128100 Sobic009G237800--Sobic003G264700 Sobic001G337600 Sobic001G337600 Sobic009G237800--Sobic001G337600 Sobic009G237800--Sobic004G072000 Sobic009G237800--Sobic010G244600 Sobic006G127300--Sobic005G128100 Sobic003G230400 Sobic003G230400 Sobic006G127300--Sobic003G230400 Sobic007G205500 Sobic007G205500 Sobic006G127300--Sobic007G205500 Sobic006G127300--Sobic007G204400 Sobic001G010100 Sobic001G010100 Sobic006G127300--Sobic001G010100 Sobic001G413600 Sobic001G413600 Sobic006G127300--Sobic001G413600 Sobic009G130700 Sobic009G130700 Sobic006G127300--Sobic009G130700 Sobic007G004600 Sobic007G004600 Sobic006G127300--Sobic007G004600 Sobic006G127300--Sobic009G179800 Sobic009G179800--Sobic009G130700 Sobic003G393800 Sobic003G393800 Sobic009G179800--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic009G179800--Sobic003G246400 Sobic003G246600 Sobic003G246600 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic001G411300 Sobic001G411300 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300 Sobic001G030200 Sobic001G030200 Sobic010G208000--Sobic001G030200 Sobic001G516800 Sobic001G516800 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic004G034500 Sobic004G034500 Sobic010G208000--Sobic004G034500 Sobic002G019900 Sobic002G019900 Sobic010G208000--Sobic002G019900 Sobic008G131200 Sobic008G131200 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300
Octagon: transcription factors


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