Gene annotation
Transcriptome id Sobic.002G077000.2,Sobic.002G077000.1
Synonym Sb02g006430, CSP41A
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt A0A1B6Q9X0 , C5XDB7
Pfam PF01370 PF13460
Panther DB PTHR10366 PTHR10366:SF278
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT3G63140 : chloroplast stem-loop binding protein of 41 kDa
RAP-DB (Rice) LOC_Os07g11110.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a045403
Brachypodium KQK20355
Barley HORVU6Hr1G004860.4 , HORVU6Hr1G004860.8 , HORVU6Hr1G004860.9 , HORVU6Hr1G004860.3 , HORVU6Hr1G004860.1 , HORVU6Hr1G004860.6 , HORVU6Hr1G004860.7 , HORVU6Hr1G004860.5 , HORVU6Hr1G004860.10
Wheat TraesCS6D02G029300 , TraesCS6A02G025700 , TraesCS6B02G036400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G128100 acyl carrier protein, putative, expressed -
2 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
3 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
4 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
5 Sobic.009G055800 expressed protein -
6 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
7 Sobic.002G343700 expressed protein -
8 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
9 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
10 Sobic.009G237800 expressed protein -
11 Sobic.010G116500 expressed protein -
12 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
13 Sobic.009G179800 - -
14 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
15 Sobic.001G337600 expressed protein -
16 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
17 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
18 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
19 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
20 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G077000 Sobic002G077000 Sobic005G128100 Sobic005G128100 Sobic002G077000--Sobic005G128100 Sobic001G411300 Sobic001G411300 Sobic002G077000--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic002G077000--Sobic003G256200 Sobic003G132600 Sobic003G132600 Sobic002G077000--Sobic003G132600 Sobic009G055800 Sobic009G055800 Sobic002G077000--Sobic009G055800 Sobic002G215000 Sobic002G215000 Sobic002G077000--Sobic002G215000 Sobic002G343700 Sobic002G343700 Sobic002G077000--Sobic002G343700 Sobic001G427000 Sobic001G427000 Sobic002G077000--Sobic001G427000 Sobic004G298100 Sobic004G298100 Sobic002G077000--Sobic004G298100 Sobic003G393800 Sobic003G393800 Sobic005G128100--Sobic003G393800 Sobic009G179800 Sobic009G179800 Sobic005G128100--Sobic009G179800 Sobic005G128100--Sobic002G077000 Sobic005G128100--Sobic001G411300 Sobic005G128100--Sobic003G256200 Sobic005G128100--Sobic002G343700 Sobic003G246600 Sobic003G246600 Sobic005G128100--Sobic003G246600 Sobic005G128100--Sobic001G427000 Sobic005G128100--Sobic003G132600 Sobic003G246400 Sobic003G246400 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G191000 Sobic001G191000 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G453300 Sobic001G453300 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic001G411300--Sobic009G179800 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic003G256200--Sobic001G240000 Sobic003G132600--Sobic001G427000 Sobic003G132600--Sobic001G453300 Sobic001G383900 Sobic001G383900 Sobic003G132600--Sobic001G383900 Sobic001G076500 Sobic001G076500 Sobic003G132600--Sobic001G076500 Sobic001G027600 Sobic001G027600 Sobic003G132600--Sobic001G027600 Sobic003G132600--Sobic001G391400 Sobic003G132600--Sobic003G256200 Sobic003G132600--Sobic002G343700 Sobic003G132600--Sobic003G393800 Sobic001G469900 Sobic001G469900 Sobic009G055800--Sobic001G469900 Sobic001G035800 Sobic001G035800 Sobic009G055800--Sobic001G035800 Sobic003G077400 Sobic003G077400 Sobic009G055800--Sobic003G077400 Sobic009G164300 Sobic009G164300 Sobic009G055800--Sobic009G164300 Sobic003G439000 Sobic003G439000 Sobic009G055800--Sobic003G439000 Sobic003G254600 Sobic003G254600 Sobic009G055800--Sobic003G254600 Sobic008G062500 Sobic008G062500 Sobic009G055800--Sobic008G062500 Sobic001G168800 Sobic001G168800 Sobic009G055800--Sobic001G168800 Sobic001G469933 Sobic001G469933 Sobic009G055800--Sobic001G469933 Sobic003G074700 Sobic003G074700 Sobic002G215000--Sobic003G074700 Sobic008G131700 Sobic008G131700 Sobic002G215000--Sobic008G131700 Sobic006G060200 Sobic006G060200 Sobic002G215000--Sobic006G060200 Sobic003G305300 Sobic003G305300 Sobic002G215000--Sobic003G305300 Sobic004G068300 Sobic004G068300 Sobic002G215000--Sobic004G068300 Sobic002G215000--Sobic009G164300 Sobic002G215000--Sobic002G077000 Sobic006G222700 Sobic006G222700 Sobic002G215000--Sobic006G222700 Sobic006G229300 Sobic006G229300 Sobic002G215000--Sobic006G229300 Sobic002G343700--Sobic003G132600 Sobic002G343700--Sobic001G076500 Sobic004G017200 Sobic004G017200 Sobic002G343700--Sobic004G017200 Sobic002G343700--Sobic001G427000 Sobic002G343700--Sobic003G393800 Sobic002G343700--Sobic005G128100 Sobic002G343700--Sobic001G383900 Sobic002G343700--Sobic001G453300 Sobic004G044000 Sobic004G044000 Sobic002G343700--Sobic004G044000 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic010G233800 Sobic010G233800 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic004G298100--Sobic003G256200 Sobic004G298100--Sobic001G391400 Sobic004G298100--Sobic003G246400 Sobic004G298100--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic004G298100--Sobic004G116100 Sobic004G298100--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic004G298100--Sobic004G317900
Octagon: transcription factors


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