Gene annotation
Transcriptome id Sobic.010G116500.1
Synonym Sb10g010300
Functional annotation expressed protein
UniProt C5Z8K3
Pfam PF05421
Panther DB PTHR36049 PTHR36049:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16410 : -
RAP-DB (Rice) LOC_Os07g41630.1 : expressed protein
MaizeGDB (Corn) Zm00025a042740 , Zm00025a050466
Brachypodium KQK19148 , KQK19149
Barley HORVU7Hr1G033500.1 , HORVU7Hr1G033500.6
Wheat TraesCS7D02G161000 , TraesCS7B02G065200 , TraesCS7B02G065200 , TraesCS7A02G160300
Populus -


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cDNA sequences
Sobic.010G116500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
2 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
3 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
4 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
5 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
6 Sobic.006G248200 - -
7 Sobic.003G386300 expressed protein -
8 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
9 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
10 Sobic.003G433900 expressed protein -
11 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
12 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
13 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
14 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
15 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
16 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
20 Sobic.001G221300 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase


Gene co-expression network
sample Sobic010G116500 Sobic010G116500 Sobic003G328200 Sobic003G328200 Sobic010G116500--Sobic003G328200 Sobic001G240000 Sobic001G240000 Sobic010G116500--Sobic001G240000 Sobic010G022100 Sobic010G022100 Sobic010G116500--Sobic010G022100 Sobic001G527100 Sobic001G527100 Sobic010G116500--Sobic001G527100 Sobic003G014100 Sobic003G014100 Sobic010G116500--Sobic003G014100 Sobic006G248200 Sobic006G248200 Sobic010G116500--Sobic006G248200 Sobic003G386300 Sobic003G386300 Sobic010G116500--Sobic003G386300 Sobic002G198600 Sobic002G198600 Sobic010G116500--Sobic002G198600 Sobic001G411300 Sobic001G411300 Sobic010G116500--Sobic001G411300 Sobic003G328200--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic003G328200--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic003G328200--Sobic001G240000 Sobic003G295800 Sobic003G295800 Sobic003G328200--Sobic003G295800 Sobic004G116100 Sobic004G116100 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G328200--Sobic003G386300 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G122400 Sobic001G122400 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G391400 Sobic001G391400 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000 Sobic009G091800 Sobic009G091800 Sobic010G022100--Sobic009G091800 Sobic004G234200 Sobic004G234200 Sobic010G022100--Sobic004G234200 Sobic002G288300 Sobic002G288300 Sobic010G022100--Sobic002G288300 Sobic010G011800 Sobic010G011800 Sobic010G022100--Sobic010G011800 Sobic002G297300 Sobic002G297300 Sobic010G022100--Sobic002G297300 Sobic010G000500 Sobic010G000500 Sobic010G022100--Sobic010G000500 Sobic008G051000 Sobic008G051000 Sobic010G022100--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic010G022100--Sobic002G414400 Sobic004G238500 Sobic004G238500 Sobic010G022100--Sobic004G238500 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic003G014100--Sobic001G391400 Sobic003G014100--Sobic001G527100 Sobic003G014100--Sobic004G116100 Sobic003G014100--Sobic004G164100 Sobic003G014100--Sobic004G335800 Sobic003G014100--Sobic001G040000 Sobic003G014100--Sobic003G386300 Sobic003G393800 Sobic003G393800 Sobic003G014100--Sobic003G393800 Sobic003G014100--Sobic010G116500 Sobic006G248200--Sobic003G386300 Sobic006G248200--Sobic001G240000 Sobic001G531200 Sobic001G531200 Sobic006G248200--Sobic001G531200 Sobic006G248200--Sobic002G198600 Sobic003G030900 Sobic003G030900 Sobic006G248200--Sobic003G030900 Sobic001G475600 Sobic001G475600 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic002G305700 Sobic002G305700 Sobic006G248200--Sobic002G305700 Sobic006G248200--Sobic004G311100 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic002G198600--Sobic006G248200 Sobic002G198600--Sobic010G011800 Sobic002G198600--Sobic004G311100 Sobic001G411300--Sobic003G246400 Sobic003G256200 Sobic003G256200 Sobic001G411300--Sobic003G256200 Sobic001G191000 Sobic001G191000 Sobic001G411300--Sobic001G191000 Sobic001G427000 Sobic001G427000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G453300 Sobic001G453300 Sobic001G411300--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G411300--Sobic004G298100 Sobic009G179800 Sobic009G179800 Sobic001G411300--Sobic009G179800
Octagon: transcription factors


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