Gene annotation
Transcriptome id Sobic.002G343700.1
Synonym Sb02g036760
Functional annotation expressed protein
UniProt C5XBP8
Pfam -
Panther DB PTHR37716 PTHR37716:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g38150.1 : expressed protein
MaizeGDB (Corn) Zm00025a014943
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
2 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
3 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
5 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
6 Sobic.005G128100 acyl carrier protein, putative, expressed -
7 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
9 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
10 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
11 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
12 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
13 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
14 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
15 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
16 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
17 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
18 Sobic.006G074100 ctr copper transporter family protein, putative, expressed -
19 Sobic.010G116500 expressed protein -
20 Sobic.002G077000 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G343700 Sobic002G343700 Sobic003G132600 Sobic003G132600 Sobic002G343700--Sobic003G132600 Sobic001G076500 Sobic001G076500 Sobic002G343700--Sobic001G076500 Sobic004G017200 Sobic004G017200 Sobic002G343700--Sobic004G017200 Sobic001G427000 Sobic001G427000 Sobic002G343700--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic002G343700--Sobic003G393800 Sobic005G128100 Sobic005G128100 Sobic002G343700--Sobic005G128100 Sobic001G383900 Sobic001G383900 Sobic002G343700--Sobic001G383900 Sobic001G453300 Sobic001G453300 Sobic002G343700--Sobic001G453300 Sobic004G044000 Sobic004G044000 Sobic002G343700--Sobic004G044000 Sobic003G132600--Sobic001G427000 Sobic003G132600--Sobic001G453300 Sobic003G132600--Sobic001G383900 Sobic003G132600--Sobic001G076500 Sobic001G027600 Sobic001G027600 Sobic003G132600--Sobic001G027600 Sobic001G391400 Sobic001G391400 Sobic003G132600--Sobic001G391400 Sobic003G256200 Sobic003G256200 Sobic003G132600--Sobic003G256200 Sobic003G132600--Sobic002G343700 Sobic003G132600--Sobic003G393800 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic010G233800 Sobic010G233800 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic001G076500--Sobic004G044000 Sobic003G246400 Sobic003G246400 Sobic001G076500--Sobic003G246400 Sobic004G017200--Sobic002G343700 Sobic004G017200--Sobic004G044000 Sobic001G120000 Sobic001G120000 Sobic004G017200--Sobic001G120000 Sobic004G017200--Sobic001G027600 Sobic003G030900 Sobic003G030900 Sobic004G017200--Sobic003G030900 Sobic004G017200--Sobic001G076500 Sobic004G017200--Sobic001G427000 Sobic006G280050 Sobic006G280050 Sobic004G017200--Sobic006G280050 Sobic003G095000 Sobic003G095000 Sobic004G017200--Sobic003G095000 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic009G179800 Sobic009G179800 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic005G128100--Sobic003G393800 Sobic005G128100--Sobic009G179800 Sobic002G077000 Sobic002G077000 Sobic005G128100--Sobic002G077000 Sobic001G411300 Sobic001G411300 Sobic005G128100--Sobic001G411300 Sobic005G128100--Sobic003G256200 Sobic005G128100--Sobic002G343700 Sobic005G128100--Sobic003G246600 Sobic005G128100--Sobic001G427000 Sobic005G128100--Sobic003G132600 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic004G044000--Sobic001G027600 Sobic004G044000--Sobic001G383900 Sobic004G044000--Sobic006G280050 Sobic004G044000--Sobic009G001500 Sobic004G044000--Sobic003G030900 Sobic007G013400 Sobic007G013400 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.