Gene annotation
Transcriptome id Sobic.006G074100.1
Synonym COPT1, Sb06g016150
Functional annotation ctr copper transporter family protein, putative, expressed
UniProt A0A1B6PKT0
Pfam PF04145
Panther DB PTHR12483 PTHR12483:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0005375copper ion transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT2G26975 : Ctr copper transporter family
RAP-DB (Rice) LOC_Os04g33900.1 : ctr copper transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a011484 , Zm00025a056009
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G343700 expressed protein -
2 Sobic.007G136600 SET domain-containing protein, putative, expressed -
3 Sobic.004G309400 DCL, chloroplast precursor, putative, expressed -
4 Sobic.001G531000 expressed protein -
5 Sobic.003G229700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
6 Sobic.003G095000 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.010G116500 expressed protein -
8 Sobic.009G206400 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
9 Sobic.004G343000 RNA recognition motif containing protein, putative, expressed -
10 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
11 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
12 Sobic.005G128100 acyl carrier protein, putative, expressed -
13 Sobic.010G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Superoxide dismutase (Os)(PubMedID : 27208977)@superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
14 Sobic.001G413600 expressed protein -
15 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.007G205500 expressed protein -
17 Sobic.005G218700 NB-ARC domain containing protein, expressed -
18 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
19 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
20 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G074100 Sobic006G074100 Sobic002G343700 Sobic002G343700 Sobic006G074100--Sobic002G343700 Sobic007G136600 Sobic007G136600 Sobic006G074100--Sobic007G136600 Sobic004G309400 Sobic004G309400 Sobic006G074100--Sobic004G309400 Sobic001G531000 Sobic001G531000 Sobic006G074100--Sobic001G531000 Sobic003G229700 Sobic003G229700 Sobic006G074100--Sobic003G229700 Sobic003G095000 Sobic003G095000 Sobic006G074100--Sobic003G095000 Sobic010G116500 Sobic010G116500 Sobic006G074100--Sobic010G116500 Sobic009G206400 Sobic009G206400 Sobic006G074100--Sobic009G206400 Sobic004G343000 Sobic004G343000 Sobic006G074100--Sobic004G343000 Sobic003G132600 Sobic003G132600 Sobic002G343700--Sobic003G132600 Sobic001G076500 Sobic001G076500 Sobic002G343700--Sobic001G076500 Sobic004G017200 Sobic004G017200 Sobic002G343700--Sobic004G017200 Sobic001G427000 Sobic001G427000 Sobic002G343700--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic002G343700--Sobic003G393800 Sobic005G128100 Sobic005G128100 Sobic002G343700--Sobic005G128100 Sobic001G383900 Sobic001G383900 Sobic002G343700--Sobic001G383900 Sobic001G453300 Sobic001G453300 Sobic002G343700--Sobic001G453300 Sobic004G044000 Sobic004G044000 Sobic002G343700--Sobic004G044000 Sobic007G136600--Sobic006G074100 Sobic007G136600--Sobic001G531000 Sobic002G226100 Sobic002G226100 Sobic007G136600--Sobic002G226100 Sobic007G136600--Sobic003G095000 Sobic007G136600--Sobic002G343700 Sobic009G138900 Sobic009G138900 Sobic007G136600--Sobic009G138900 Sobic010G060000 Sobic010G060000 Sobic007G136600--Sobic010G060000 Sobic001G281800 Sobic001G281800 Sobic007G136600--Sobic001G281800 Sobic001G276100 Sobic001G276100 Sobic007G136600--Sobic001G276100 Sobic007G004700 Sobic007G004700 Sobic004G309400--Sobic007G004700 Sobic009G131800 Sobic009G131800 Sobic004G309400--Sobic009G131800 Sobic001G083100 Sobic001G083100 Sobic004G309400--Sobic001G083100 Sobic007G205500 Sobic007G205500 Sobic004G309400--Sobic007G205500 Sobic001G413600 Sobic001G413600 Sobic004G309400--Sobic001G413600 Sobic001G175700 Sobic001G175700 Sobic004G309400--Sobic001G175700 Sobic002G272100 Sobic002G272100 Sobic004G309400--Sobic002G272100 Sobic006G021600 Sobic006G021600 Sobic004G309400--Sobic006G021600 Sobic006G067400 Sobic006G067400 Sobic004G309400--Sobic006G067400 Sobic005G036500 Sobic005G036500 Sobic001G531000--Sobic005G036500 Sobic001G531000--Sobic007G136600 Sobic001G531000--Sobic003G095000 Sobic001G531000--Sobic006G074100 Sobic001G347800 Sobic001G347800 Sobic001G531000--Sobic001G347800 Sobic005G218700 Sobic005G218700 Sobic001G531000--Sobic005G218700 Sobic008G136500 Sobic008G136500 Sobic001G531000--Sobic008G136500 Sobic001G531000--Sobic003G229700 Sobic002G025300 Sobic002G025300 Sobic001G531000--Sobic002G025300 Sobic003G229700--Sobic005G036500 Sobic003G287000 Sobic003G287000 Sobic003G229700--Sobic003G287000 Sobic007G142300 Sobic007G142300 Sobic003G229700--Sobic007G142300 Sobic003G229700--Sobic003G095000 Sobic005G227000 Sobic005G227000 Sobic003G229700--Sobic005G227000 Sobic008G189500 Sobic008G189500 Sobic003G229700--Sobic008G189500 Sobic003G229700--Sobic010G116500 Sobic003G229700--Sobic006G074100 Sobic005G147800 Sobic005G147800 Sobic003G229700--Sobic005G147800 Sobic004G249400 Sobic004G249400 Sobic003G095000--Sobic004G249400 Sobic003G095000--Sobic004G044000 Sobic003G095000--Sobic001G076500 Sobic007G127600 Sobic007G127600 Sobic003G095000--Sobic007G127600 Sobic001G453200 Sobic001G453200 Sobic003G095000--Sobic001G453200 Sobic003G095000--Sobic004G017200 Sobic003G095000--Sobic010G116500 Sobic003G095000--Sobic001G427000 Sobic003G095000--Sobic002G343700 Sobic003G328200 Sobic003G328200 Sobic010G116500--Sobic003G328200 Sobic001G240000 Sobic001G240000 Sobic010G116500--Sobic001G240000 Sobic010G022100 Sobic010G022100 Sobic010G116500--Sobic010G022100 Sobic001G527100 Sobic001G527100 Sobic010G116500--Sobic001G527100 Sobic003G014100 Sobic003G014100 Sobic010G116500--Sobic003G014100 Sobic006G248200 Sobic006G248200 Sobic010G116500--Sobic006G248200 Sobic003G386300 Sobic003G386300 Sobic010G116500--Sobic003G386300 Sobic002G198600 Sobic002G198600 Sobic010G116500--Sobic002G198600 Sobic001G411300 Sobic001G411300 Sobic010G116500--Sobic001G411300 Sobic002G040500 Sobic002G040500 Sobic009G206400--Sobic002G040500 Sobic006G165650 Sobic006G165650 Sobic009G206400--Sobic006G165650 Sobic009G206400--Sobic010G060000 Sobic009G206400--Sobic006G074100 Sobic003G437600 Sobic003G437600 Sobic009G206400--Sobic003G437600 Sobic003G325300 Sobic003G325300 Sobic009G206400--Sobic003G325300 Sobic004G187100 Sobic004G187100 Sobic009G206400--Sobic004G187100 Sobic003G382300 Sobic003G382300 Sobic009G206400--Sobic003G382300 Sobic001G077100 Sobic001G077100 Sobic009G206400--Sobic001G077100 Sobic004G343000--Sobic009G131800 Sobic004G326500 Sobic004G326500 Sobic004G343000--Sobic004G326500 Sobic004G020300 Sobic004G020300 Sobic004G343000--Sobic004G020300 Sobic004G055000 Sobic004G055000 Sobic004G343000--Sobic004G055000 Sobic003G275200 Sobic003G275200 Sobic004G343000--Sobic003G275200 Sobic004G164100 Sobic004G164100 Sobic004G343000--Sobic004G164100 Sobic004G343000--Sobic003G014100 Sobic001G405700 Sobic001G405700 Sobic004G343000--Sobic001G405700 Sobic002G198000 Sobic002G198000 Sobic004G343000--Sobic002G198000
Octagon: transcription factors


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