Gene annotation
Transcriptome id Sobic.004G343000.1
Synonym Sb04g037020
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XVU6
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G60000 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g57010.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022587
Brachypodium KQK01329
Barley -
Wheat TraesCS6D02G370900 , TraesCS6A02G386300 , TraesCS6B02G425300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
2 Sobic.004G326500 PAP fibrillin family domain containing protein, expressed -
3 Sobic.004G020300 expressed protein -
4 Sobic.004G055000 peptidase, cysteine peptidase active site, putative, expressed -
5 Sobic.003G275200 methyltransferase domain containing protein, expressed -
6 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
8 Sobic.001G405700 - -
9 Sobic.002G198000 CRR6, putative, expressed -
10 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
11 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
12 Sobic.002G272100 expressed protein -
13 Sobic.006G021600 uncharacterized membrane protein, putative, expressed -
14 Sobic.010G013700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@high-affinity nickel-transport family protein, putative, expressed -
15 Sobic.002G267900 expressed protein -
16 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
17 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
18 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
19 Sobic.004G309400 DCL, chloroplast precursor, putative, expressed -
20 Sobic.006G108200 expressed protein -


Gene co-expression network
sample Sobic004G343000 Sobic004G343000 Sobic009G131800 Sobic009G131800 Sobic004G343000--Sobic009G131800 Sobic004G326500 Sobic004G326500 Sobic004G343000--Sobic004G326500 Sobic004G020300 Sobic004G020300 Sobic004G343000--Sobic004G020300 Sobic004G055000 Sobic004G055000 Sobic004G343000--Sobic004G055000 Sobic003G275200 Sobic003G275200 Sobic004G343000--Sobic003G275200 Sobic004G164100 Sobic004G164100 Sobic004G343000--Sobic004G164100 Sobic003G014100 Sobic003G014100 Sobic004G343000--Sobic003G014100 Sobic001G405700 Sobic001G405700 Sobic004G343000--Sobic001G405700 Sobic002G198000 Sobic002G198000 Sobic004G343000--Sobic002G198000 Sobic001G175700 Sobic001G175700 Sobic009G131800--Sobic001G175700 Sobic009G131800--Sobic004G055000 Sobic002G272100 Sobic002G272100 Sobic009G131800--Sobic002G272100 Sobic009G131800--Sobic004G020300 Sobic009G131800--Sobic004G343000 Sobic009G131800--Sobic001G405700 Sobic008G172700 Sobic008G172700 Sobic009G131800--Sobic008G172700 Sobic003G408000 Sobic003G408000 Sobic009G131800--Sobic003G408000 Sobic002G267900 Sobic002G267900 Sobic009G131800--Sobic002G267900 Sobic004G326500--Sobic003G275200 Sobic004G326500--Sobic004G055000 Sobic004G326500--Sobic002G198000 Sobic004G326500--Sobic004G164100 Sobic004G326500--Sobic002G267900 Sobic001G527100 Sobic001G527100 Sobic004G326500--Sobic001G527100 Sobic004G326500--Sobic008G172700 Sobic004G326500--Sobic004G343000 Sobic001G122400 Sobic001G122400 Sobic004G326500--Sobic001G122400 Sobic004G020300--Sobic009G131800 Sobic009G210200 Sobic009G210200 Sobic004G020300--Sobic009G210200 Sobic004G020300--Sobic002G272100 Sobic004G020300--Sobic001G405700 Sobic004G020300--Sobic002G267900 Sobic004G020300--Sobic008G172700 Sobic004G020300--Sobic004G343000 Sobic006G021600 Sobic006G021600 Sobic004G020300--Sobic006G021600 Sobic003G022300 Sobic003G022300 Sobic004G020300--Sobic003G022300 Sobic004G055000--Sobic003G275200 Sobic004G154800 Sobic004G154800 Sobic004G055000--Sobic004G154800 Sobic004G055000--Sobic008G172700 Sobic004G055000--Sobic002G267900 Sobic004G055000--Sobic009G131800 Sobic004G055000--Sobic004G326500 Sobic002G351600 Sobic002G351600 Sobic004G055000--Sobic002G351600 Sobic006G108200 Sobic006G108200 Sobic004G055000--Sobic006G108200 Sobic004G055000--Sobic002G272100 Sobic003G275200--Sobic004G055000 Sobic003G275200--Sobic006G108200 Sobic003G275200--Sobic004G326500 Sobic003G275200--Sobic004G154800 Sobic003G275200--Sobic008G172700 Sobic003G275200--Sobic002G351600 Sobic001G350000 Sobic001G350000 Sobic003G275200--Sobic001G350000 Sobic008G039600 Sobic008G039600 Sobic003G275200--Sobic008G039600 Sobic003G275200--Sobic002G272100 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic003G386300 Sobic003G386300 Sobic004G164100--Sobic003G386300 Sobic002G251400 Sobic002G251400 Sobic004G164100--Sobic002G251400 Sobic001G240000 Sobic001G240000 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic010G095200 Sobic010G095200 Sobic004G164100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic004G164100--Sobic004G335800 Sobic004G164100--Sobic004G326500 Sobic001G391400 Sobic001G391400 Sobic003G014100--Sobic001G391400 Sobic003G014100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic003G014100--Sobic004G116100 Sobic003G014100--Sobic004G164100 Sobic003G014100--Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic003G014100--Sobic001G040000 Sobic003G014100--Sobic003G386300 Sobic003G393800 Sobic003G393800 Sobic003G014100--Sobic003G393800 Sobic010G116500 Sobic010G116500 Sobic003G014100--Sobic010G116500 Sobic005G194100 Sobic005G194100 Sobic001G405700--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic001G405700--Sobic007G052400 Sobic010G005500 Sobic010G005500 Sobic001G405700--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic001G405700--Sobic009G030900 Sobic001G405700--Sobic001G175700 Sobic004G012900 Sobic004G012900 Sobic001G405700--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic001G405700--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic001G405700--Sobic004G239100 Sobic002G227700 Sobic002G227700 Sobic001G405700--Sobic002G227700 Sobic002G198000--Sobic004G164100 Sobic002G198000--Sobic001G527100 Sobic002G198000--Sobic001G122400 Sobic002G198000--Sobic003G386300 Sobic002G198000--Sobic001G240000 Sobic002G198000--Sobic004G335800 Sobic001G469933 Sobic001G469933 Sobic002G198000--Sobic001G469933 Sobic002G198000--Sobic002G251400 Sobic002G198000--Sobic010G095200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.