Gene annotation
Transcriptome id Sobic.004G055000.1,Sobic.004G055000.2
Synonym Sb04g004670
Functional annotation peptidase, cysteine peptidase active site, putative, expressed
UniProt C5XW36 , A0A1Z5RLI9
Pfam -
Panther DB PTHR33471 PTHR33471:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56180 : -
RAP-DB (Rice) LOC_Os02g07250.1 : peptidase, cysteine peptidase active site, putative, expressed
MaizeGDB (Corn) Zm00025a019074
Brachypodium KQJ93533 , PNT65980
Barley -
Wheat TraesCS6A02G166300 , TraesCS6B02G193700 , TraesCS6D02G154900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G275200 methyltransferase domain containing protein, expressed -
2 Sobic.004G154800 expressed protein -
3 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
4 Sobic.002G267900 expressed protein -
5 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
6 Sobic.004G326500 PAP fibrillin family domain containing protein, expressed -
7 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase
8 Sobic.006G108200 expressed protein -
9 Sobic.002G272100 expressed protein -
10 Sobic.001G350000 expressed protein -
11 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
13 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
14 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
15 Sobic.004G028300 expressed protein -
16 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.004G343000 RNA recognition motif containing protein, putative, expressed -
18 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
19 Sobic.001G175700 expressed protein -
20 Sobic.001G118400 expressed protein -


Gene co-expression network
sample Sobic004G055000 Sobic004G055000 Sobic003G275200 Sobic003G275200 Sobic004G055000--Sobic003G275200 Sobic004G154800 Sobic004G154800 Sobic004G055000--Sobic004G154800 Sobic008G172700 Sobic008G172700 Sobic004G055000--Sobic008G172700 Sobic002G267900 Sobic002G267900 Sobic004G055000--Sobic002G267900 Sobic009G131800 Sobic009G131800 Sobic004G055000--Sobic009G131800 Sobic004G326500 Sobic004G326500 Sobic004G055000--Sobic004G326500 Sobic002G351600 Sobic002G351600 Sobic004G055000--Sobic002G351600 Sobic006G108200 Sobic006G108200 Sobic004G055000--Sobic006G108200 Sobic002G272100 Sobic002G272100 Sobic004G055000--Sobic002G272100 Sobic003G275200--Sobic004G055000 Sobic003G275200--Sobic006G108200 Sobic003G275200--Sobic004G326500 Sobic003G275200--Sobic004G154800 Sobic003G275200--Sobic008G172700 Sobic003G275200--Sobic002G351600 Sobic001G350000 Sobic001G350000 Sobic003G275200--Sobic001G350000 Sobic008G039600 Sobic008G039600 Sobic003G275200--Sobic008G039600 Sobic003G275200--Sobic002G272100 Sobic004G154800--Sobic004G055000 Sobic004G154800--Sobic003G275200 Sobic001G167900 Sobic001G167900 Sobic004G154800--Sobic001G167900 Sobic004G154800--Sobic006G108200 Sobic004G124400 Sobic004G124400 Sobic004G154800--Sobic004G124400 Sobic004G028300 Sobic004G028300 Sobic004G154800--Sobic004G028300 Sobic001G220000 Sobic001G220000 Sobic004G154800--Sobic001G220000 Sobic004G154800--Sobic002G351600 Sobic010G062500 Sobic010G062500 Sobic004G154800--Sobic010G062500 Sobic008G172700--Sobic002G267900 Sobic008G172700--Sobic001G350000 Sobic004G239100 Sobic004G239100 Sobic008G172700--Sobic004G239100 Sobic008G172700--Sobic004G055000 Sobic003G378600 Sobic003G378600 Sobic008G172700--Sobic003G378600 Sobic010G277600 Sobic010G277600 Sobic008G172700--Sobic010G277600 Sobic009G183700 Sobic009G183700 Sobic008G172700--Sobic009G183700 Sobic008G171300 Sobic008G171300 Sobic008G172700--Sobic008G171300 Sobic004G359600 Sobic004G359600 Sobic008G172700--Sobic004G359600 Sobic002G267900--Sobic008G172700 Sobic002G267900--Sobic004G055000 Sobic002G267900--Sobic002G272100 Sobic002G267900--Sobic010G277600 Sobic002G267900--Sobic009G183700 Sobic002G267900--Sobic004G326500 Sobic002G401800 Sobic002G401800 Sobic002G267900--Sobic002G401800 Sobic008G119300 Sobic008G119300 Sobic002G267900--Sobic008G119300 Sobic002G198000 Sobic002G198000 Sobic002G267900--Sobic002G198000 Sobic001G175700 Sobic001G175700 Sobic009G131800--Sobic001G175700 Sobic009G131800--Sobic004G055000 Sobic009G131800--Sobic002G272100 Sobic004G020300 Sobic004G020300 Sobic009G131800--Sobic004G020300 Sobic004G343000 Sobic004G343000 Sobic009G131800--Sobic004G343000 Sobic001G405700 Sobic001G405700 Sobic009G131800--Sobic001G405700 Sobic009G131800--Sobic008G172700 Sobic003G408000 Sobic003G408000 Sobic009G131800--Sobic003G408000 Sobic009G131800--Sobic002G267900 Sobic004G326500--Sobic003G275200 Sobic004G326500--Sobic004G055000 Sobic004G326500--Sobic002G198000 Sobic004G164100 Sobic004G164100 Sobic004G326500--Sobic004G164100 Sobic004G326500--Sobic002G267900 Sobic001G527100 Sobic001G527100 Sobic004G326500--Sobic001G527100 Sobic004G326500--Sobic008G172700 Sobic004G326500--Sobic004G343000 Sobic001G122400 Sobic001G122400 Sobic004G326500--Sobic001G122400 Sobic008G050400 Sobic008G050400 Sobic002G351600--Sobic008G050400 Sobic002G351600--Sobic002G272100 Sobic002G351600--Sobic001G167900 Sobic002G351600--Sobic002G401800 Sobic002G351600--Sobic008G172700 Sobic002G351600--Sobic006G108200 Sobic002G351600--Sobic004G055000 Sobic002G351600--Sobic004G124400 Sobic002G351600--Sobic003G275200 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic005G134100 Sobic005G134100 Sobic006G108200--Sobic005G134100 Sobic002G272100--Sobic002G401800 Sobic008G073100 Sobic008G073100 Sobic002G272100--Sobic008G073100 Sobic001G368500 Sobic001G368500 Sobic002G272100--Sobic001G368500 Sobic002G272100--Sobic008G050400 Sobic002G272100--Sobic008G039600 Sobic002G272100--Sobic002G351600 Sobic002G272100--Sobic002G267900 Sobic001G083100 Sobic001G083100 Sobic002G272100--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic002G272100--Sobic005G110400
Octagon: transcription factors


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