Gene annotation
| Transcriptome id | Sobic.008G050400.3,Sobic.008G050400.2,Sobic.008G050400.1 |
|---|---|
| Synonym | Sb08g004240 |
| Functional annotation | 5-formyltetrahydrofolate cyclo-ligase, putative, expressed |
| UniProt | A0A1Z5R5G0 |
| Pfam | PF01812 |
| Panther DB | PTHR13017 PTHR13017:SF0 |
| NCBI CDD | KOG4410; 5-formyltetrahydrofolate cyclo-ligase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G76730 : NagB/RpiA/CoA transferase-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g07020.1 : 5-formyltetrahydrofolate cyclo-ligase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a054016 |
| Brachypodium | KQJ92090 |
| Barley | - |
| Wheat | TraesCS5D02G129300 , TraesCS5D02G129300 , TraesCS5D02G129300 , TraesCS5B02G118300 , TraesCS5B02G118300 , TraesCS5B02G118300 , TraesCS5A02G112500 |
| Populus | - |
JBrowse
| Sobic.008G050400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G272100 | expressed protein | - |
| 2 | Sobic.002G351600 | prenyltransferase, putative, expressed | K12501: homogentisate solanesyltransferase |
| 3 | Sobic.005G143500 | aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed | K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B |
| 4 | Sobic.002G274200 | expressed protein | - |
| 5 | Sobic.002G401800 | bifunctional thioredoxin reductase/thioredoxin, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 6 | Sobic.001G083100 | Unnamed(PubMedID : 24676859)@WRKY4, expressed | - |
| 7 | Sobic.001G495200 | Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed | K00383: GSR, glutathione reductase (NADPH) |
| 8 | Sobic.003G232700 | peptide deformylase, putative, expressed | K01462: PDF, peptide deformylase |
| 9 | Sobic.002G406700 | tyrosine-specific transport protein, putative, expressed | K03834: tyrosine-specific transport protein |
| 10 | Sobic.008G039600 | signal recognition particle 54 kDa protein, putative, expressed | K03106: SRP54, signal recognition particle subunit SRP54 |
| 11 | Sobic.002G405100 | elongation factor TS family protein, expressed | K02357: tsf, elongation factor Ts |
| 12 | Sobic.004G055000 | peptidase, cysteine peptidase active site, putative, expressed | - |
| 13 | Sobic.006G108200 | expressed protein | - |
| 14 | Sobic.006G197300 | expressed protein | - |
| 15 | Sobic.006G106400 | OsDegp5 - Putative Deg protease homologue, expressed | - |
| 16 | Sobic.008G073100 | uncharacterized protein ycf45, putative, expressed | - |
| 17 | Sobic.003G094350 | - | K01869: LARS, leucyl-tRNA synthetase |
| 18 | Sobic.002G181000 | chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed | - |
| 19 | Sobic.002G133900 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 20 | Sobic.008G172700 | OsDegp15 - Putative Deg protease homologue, expressed | - |
Gene co-expression network
Octagon: transcription factors
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