Gene annotation
Transcriptome id Sobic.010G033000.3,Sobic.010G033000.1,Sobic.010G033000.2
Synonym Sb10g002970, FSD3,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Superoxide dismutase (Os) (PubMedID : 27208977)
superoxide dismutase, chloroplast, putative, expressed
UniProt A0A1W0VRA0 , C5Z3V1 , A0A194YI44
Pfam PF00081 PF02777 PF02777 PF00081
Panther DB PTHR11404 PTHR11404:SF17
NCBI CDD KOG0876; Manganese superoxide dismutase
KEGG Orthology K04564; superoxide dismutase, Fe-Mn family
Gene Ontology GO:0006801; superoxide metabolic process GO:0004784superoxide dismutase activity


Orthologs (automatic annotation)
TAIR AT5G23310 : Fe superoxide dismutase 3
RAP-DB (Rice) LOC_Os06g05110.1 : superoxide dismutase, chloroplast, putative, expressed
MaizeGDB (Corn) Zm00025a024882 , Zm00025a041488 , Zm00025a050062
Brachypodium KQK19899
Barley HORVU7Hr1G020590.10 , HORVU7Hr1G020590.13 , HORVU7Hr1G020590.12 , HORVU7Hr1G020590.15 , HORVU7Hr1G020590.14 , HORVU7Hr1G020590.17 , HORVU7Hr1G020590.16 , HORVU7Hr1G020590.5 , HORVU7Hr1G020590.4 , HORVU7Hr1G020590.7 , HORVU7Hr1G020590.6 , HORVU7Hr1G020590.1 , HORVU7Hr1G020590.3 , HORVU7Hr1G020590.2
Wheat TraesCS7A02G090400 , TraesCS7D02G086400 , TraesCS4A02G390300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G343700 expressed protein -
3 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
4 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
5 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
6 Sobic.001G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 2, putative, expressed -
7 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
8 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
9 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
10 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
11 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
12 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
13 Sobic.009G098100 T-complex protein, putative, expressed -
14 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.002G190800 expressed protein -
16 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
17 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
18 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
19 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic010G033000 Sobic010G033000 Sobic001G383900 Sobic001G383900 Sobic010G033000--Sobic001G383900 Sobic002G343700 Sobic002G343700 Sobic010G033000--Sobic002G343700 Sobic003G132600 Sobic003G132600 Sobic010G033000--Sobic003G132600 Sobic001G076500 Sobic001G076500 Sobic010G033000--Sobic001G076500 Sobic001G172300 Sobic001G172300 Sobic010G033000--Sobic001G172300 Sobic001G347800 Sobic001G347800 Sobic010G033000--Sobic001G347800 Sobic003G014100 Sobic003G014100 Sobic010G033000--Sobic003G014100 Sobic001G453300 Sobic001G453300 Sobic010G033000--Sobic001G453300 Sobic010G012900 Sobic010G012900 Sobic010G033000--Sobic010G012900 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500 Sobic002G343700--Sobic003G132600 Sobic002G343700--Sobic001G076500 Sobic004G017200 Sobic004G017200 Sobic002G343700--Sobic004G017200 Sobic002G343700--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic002G343700--Sobic003G393800 Sobic005G128100 Sobic005G128100 Sobic002G343700--Sobic005G128100 Sobic002G343700--Sobic001G383900 Sobic002G343700--Sobic001G453300 Sobic002G343700--Sobic004G044000 Sobic003G132600--Sobic001G427000 Sobic003G132600--Sobic001G453300 Sobic003G132600--Sobic001G383900 Sobic003G132600--Sobic001G076500 Sobic003G132600--Sobic001G027600 Sobic003G132600--Sobic001G391400 Sobic003G256200 Sobic003G256200 Sobic003G132600--Sobic003G256200 Sobic003G132600--Sobic002G343700 Sobic003G132600--Sobic003G393800 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic010G233800 Sobic010G233800 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic001G076500--Sobic004G044000 Sobic003G246400 Sobic003G246400 Sobic001G076500--Sobic003G246400 Sobic001G172300--Sobic010G012900 Sobic001G172300--Sobic001G347800 Sobic003G392000 Sobic003G392000 Sobic001G172300--Sobic003G392000 Sobic001G188600 Sobic001G188600 Sobic001G172300--Sobic001G188600 Sobic002G190800 Sobic002G190800 Sobic001G172300--Sobic002G190800 Sobic006G114300 Sobic006G114300 Sobic001G172300--Sobic006G114300 Sobic002G360200 Sobic002G360200 Sobic001G172300--Sobic002G360200 Sobic001G357200 Sobic001G357200 Sobic001G172300--Sobic001G357200 Sobic004G253800 Sobic004G253800 Sobic001G172300--Sobic004G253800 Sobic001G347800--Sobic001G172300 Sobic001G347800--Sobic010G012900 Sobic001G347800--Sobic002G190800 Sobic001G347800--Sobic001G357200 Sobic001G347800--Sobic003G392000 Sobic001G347800--Sobic002G360200 Sobic002G078000 Sobic002G078000 Sobic001G347800--Sobic002G078000 Sobic001G347800--Sobic006G114300 Sobic007G034500 Sobic007G034500 Sobic001G347800--Sobic007G034500 Sobic003G014100--Sobic001G391400 Sobic001G527100 Sobic001G527100 Sobic003G014100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic003G014100--Sobic004G116100 Sobic004G164100 Sobic004G164100 Sobic003G014100--Sobic004G164100 Sobic004G335800 Sobic004G335800 Sobic003G014100--Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic003G014100--Sobic001G040000 Sobic003G386300 Sobic003G386300 Sobic003G014100--Sobic003G386300 Sobic003G014100--Sobic003G393800 Sobic010G116500 Sobic010G116500 Sobic003G014100--Sobic010G116500 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic010G012900--Sobic001G188600 Sobic010G012900--Sobic001G357200 Sobic010G011200 Sobic010G011200 Sobic010G012900--Sobic010G011200 Sobic010G012900--Sobic001G383900 Sobic010G012900--Sobic001G172300 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic010G012900--Sobic006G114300 Sobic010G012900--Sobic009G098100
Octagon: transcription factors


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