Gene annotation
Transcriptome id Sobic.004G072000.1
Synonym GHS1
Functional annotation ribosome, putative, expressed
UniProt A0A194YP97
Pfam PF01165
Panther DB PTHR21109
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G27160 : Ribosomal protein S21 family protein
RAP-DB (Rice) LOC_Os02g09590.1 : ribosome, putative, expressed
MaizeGDB (Corn) Zm00025a034705 , Zm00025a019365
Brachypodium KQJ93756
Barley HORVU6Hr1G035260.2
Wheat TraesCS6A02G173100 , TraesCS6B02G200800 , TraesCS6D02G162200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
2 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
3 Sobic.010G244600 nifU, putative, expressed -
4 Sobic.008G139900 expressed protein -
5 Sobic.007G204400 expressed protein -
6 Sobic.001G115800 expressed protein -
7 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
8 Sobic.006G204000 "Ascorbate peroxidase,heme binding / peroxidase (Os)"(PubMedID : 27208977)@Ascorbate peroxidasel heme binding / peroxidase (Os)(PubMedID : 27208977)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
9 Sobic.010G258700 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed K15227: arogenate dehydrogenase (NADP+), plant
10 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
11 Sobic.006G118000 expressed protein -
12 Sobic.005G005500 macrophage migration inhibitory factor, putative, expressed -
13 Sobic.007G013500 expressed protein -
14 Sobic.003G102800 ZOS1-01 - C2H2 zinc finger protein, expressed -
15 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
16 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.003G336200 expressed protein -
19 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
20 Sobic.005G208500 ankyrin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic004G072000 Sobic004G072000 Sobic010G208000 Sobic010G208000 Sobic004G072000--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic004G072000--Sobic004G034500 Sobic010G244600 Sobic010G244600 Sobic004G072000--Sobic010G244600 Sobic008G139900 Sobic008G139900 Sobic004G072000--Sobic008G139900 Sobic007G204400 Sobic007G204400 Sobic004G072000--Sobic007G204400 Sobic001G115800 Sobic001G115800 Sobic004G072000--Sobic001G115800 Sobic008G131200 Sobic008G131200 Sobic004G072000--Sobic008G131200 Sobic006G204000 Sobic006G204000 Sobic004G072000--Sobic006G204000 Sobic010G258700 Sobic010G258700 Sobic004G072000--Sobic010G258700 Sobic001G030200 Sobic001G030200 Sobic010G208000--Sobic001G030200 Sobic001G516800 Sobic001G516800 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic002G019900 Sobic002G019900 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic009G179800 Sobic009G179800 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic001G543500 Sobic001G543500 Sobic004G034500--Sobic001G543500 Sobic010G244600--Sobic007G204400 Sobic010G244600--Sobic004G072000 Sobic005G208500 Sobic005G208500 Sobic010G244600--Sobic005G208500 Sobic003G336200 Sobic003G336200 Sobic010G244600--Sobic003G336200 Sobic005G005500 Sobic005G005500 Sobic010G244600--Sobic005G005500 Sobic010G244600--Sobic006G204000 Sobic003G309600 Sobic003G309600 Sobic010G244600--Sobic003G309600 Sobic007G013500 Sobic007G013500 Sobic010G244600--Sobic007G013500 Sobic010G244600--Sobic001G543500 Sobic004G330400 Sobic004G330400 Sobic008G139900--Sobic004G330400 Sobic001G493800 Sobic001G493800 Sobic008G139900--Sobic001G493800 SobicK044200 SobicK044200 Sobic008G139900--SobicK044200 Sobic008G028500 Sobic008G028500 Sobic008G139900--Sobic008G028500 Sobic003G229150 Sobic003G229150 Sobic008G139900--Sobic003G229150 Sobic005G102100 Sobic005G102100 Sobic008G139900--Sobic005G102100 Sobic002G206200 Sobic002G206200 Sobic008G139900--Sobic002G206200 Sobic008G139900--Sobic006G204000 Sobic003G396900 Sobic003G396900 Sobic008G139900--Sobic003G396900 Sobic007G204400--Sobic010G244600 Sobic007G204400--Sobic004G072000 Sobic007G204400--Sobic005G208500 Sobic007G204400--Sobic006G204000 Sobic006G127300 Sobic006G127300 Sobic007G204400--Sobic006G127300 Sobic003G264700 Sobic003G264700 Sobic007G204400--Sobic003G264700 Sobic009G125500 Sobic009G125500 Sobic007G204400--Sobic009G125500 Sobic004G023400 Sobic004G023400 Sobic007G204400--Sobic004G023400 Sobic009G237800 Sobic009G237800 Sobic007G204400--Sobic009G237800 Sobic004G275500 Sobic004G275500 Sobic001G115800--Sobic004G275500 Sobic003G102800 Sobic003G102800 Sobic001G115800--Sobic003G102800 Sobic001G115800--Sobic010G258700 Sobic003G120400 Sobic003G120400 Sobic001G115800--Sobic003G120400 Sobic002G284901 Sobic002G284901 Sobic001G115800--Sobic002G284901 Sobic001G193400 Sobic001G193400 Sobic001G115800--Sobic001G193400 Sobic001G519300 Sobic001G519300 Sobic001G115800--Sobic001G519300 Sobic002G320900 Sobic002G320900 Sobic001G115800--Sobic002G320900 Sobic010G073300 Sobic010G073300 Sobic001G115800--Sobic010G073300 Sobic008G131200--Sobic001G115800 Sobic004G297800 Sobic004G297800 Sobic008G131200--Sobic004G297800 Sobic008G131200--Sobic008G139900 Sobic008G131200--Sobic004G072000 Sobic008G131200--Sobic010G258700 Sobic006G247500 Sobic006G247500 Sobic008G131200--Sobic006G247500 Sobic008G131200--Sobic004G066300 Sobic006G079100 Sobic006G079100 Sobic008G131200--Sobic006G079100 Sobic003G013100 Sobic003G013100 Sobic008G131200--Sobic003G013100 Sobic006G204000--Sobic003G309600 Sobic006G204000--Sobic001G115800 Sobic006G204000--Sobic010G258700 Sobic006G204000--Sobic008G139900 Sobic006G204000--Sobic003G120400 Sobic003G099500 Sobic003G099500 Sobic006G204000--Sobic003G099500 Sobic006G204000--Sobic002G284901 Sobic001G460800 Sobic001G460800 Sobic006G204000--Sobic001G460800 Sobic006G204000--Sobic002G320900 Sobic010G258700--Sobic001G115800 Sobic010G258700--Sobic003G102800 Sobic010G258700--Sobic006G204000 Sobic010G258700--Sobic008G139900 Sobic010G258700--Sobic003G309600 Sobic010G258700--Sobic004G275500 Sobic005G042700 Sobic005G042700 Sobic010G258700--Sobic005G042700 Sobic010G136601 Sobic010G136601 Sobic010G258700--Sobic010G136601 Sobic010G258700--Sobic003G120400
Octagon: transcription factors


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