Gene annotation
Transcriptome id Sobic.001G543500.1
Synonym ATSTP1, STP1, Sb01g050580,
Functional annotation "generic sugar transporter, up-regulated under drought stress " (PubMedID : 24655390)
Putative ortholog gene associated with awn presence/absence in wheat (PubMedID : 25237112)
transporter family protein, putative, expressed
UniProt A0A1B6QR81
Pfam PF07690
Panther DB PTHR23500:SF18 PTHR23500
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G11260 : sugar transporter 1
RAP-DB (Rice) LOC_Os10g41190.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000082 , Zm00025a051962
Brachypodium KQK24152 , PNT67889 , KQJ97806
Barley HORVU1Hr1G056010.8 , HORVU4Hr1G088650.1 , HORVU4Hr1G088650.24 , HORVU4Hr1G088650.25 , HORVU4Hr1G088650.22 , HORVU4Hr1G088650.23 , HORVU4Hr1G088650.20 , HORVU4Hr1G088650.21 , HORVU1Hr1G056010.10 , HORVU4Hr1G088650.19 , HORVU4Hr1G088650.18 , HORVU4Hr1G088650.16 , HORVU4Hr1G088650.15 , HORVU4Hr1G088650.14 , HORVU4Hr1G088650.13 , HORVU4Hr1G088650.12 , HORVU4Hr1G088650.11 , HORVU1Hr1G056010.9 , HORVU1Hr1G056010.3 , HORVU1Hr1G056010.2 , HORVU1Hr1G056010.1 , HORVU1Hr1G056010.7 , HORVU1Hr1G056010.6 , HORVU1Hr1G056010.5 , HORVU1Hr1G056010.4 , HORVU4Hr1G088650.2 , HORVU2Hr1G041080.9 , HORVU2Hr1G041080.8 , HORVU2Hr1G041080.3 , HORVU2Hr1G041080.2 , HORVU2Hr1G041080.1 , HORVU2Hr1G041080.7 , HORVU2Hr1G041080.6 , HORVU2Hr1G041080.5 , HORVU2Hr1G041080.4
Wheat TraesCS4B02G371700 , TraesCS4B02G371700 , TraesCS4D02G365800 , TraesCS1D02G221100 , TraesCS2A02G205500 , TraesCS2B02G232900 , TraesCS5A02G542600 , TraesCS5A02G542600 , TraesCS1A02G219500
Populus -


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cDNA sequences
Sobic.001G543500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G088200 expressed protein -
2 Sobic.004G072000 ribosome, putative, expressed -
3 Sobic.008G139900 expressed protein -
4 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
5 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
6 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
7 Sobic.004G033900 expressed protein -
8 Sobic.005G005500 macrophage migration inhibitory factor, putative, expressed -
9 Sobic.002G314200 ATP-dependent protease, putative, expressed -
10 Sobic.010G244600 nifU, putative, expressed -
11 Sobic.003G336200 expressed protein -
12 Sobic.006G118000 expressed protein -
13 Sobic.007G106400 endothelial differentiation-related factor 1, putative, expressed K03627: putative transcription factor
14 Sobic.004G204500 expressed protein -
15 Sobic.003G359800 MYB family transcription factor, putative, expressed -
16 Sobic.003G264700 expressed protein -
17 Sobic.002G186600 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
18 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
20 Sobic.007G013500 expressed protein -


Gene co-expression network
sample Sobic001G543500 Sobic001G543500 Sobic002G088200 Sobic002G088200 Sobic001G543500--Sobic002G088200 Sobic004G072000 Sobic004G072000 Sobic001G543500--Sobic004G072000 Sobic008G139900 Sobic008G139900 Sobic001G543500--Sobic008G139900 Sobic001G516800 Sobic001G516800 Sobic001G543500--Sobic001G516800 Sobic010G208000 Sobic010G208000 Sobic001G543500--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic001G543500--Sobic004G034500 Sobic004G033900 Sobic004G033900 Sobic001G543500--Sobic004G033900 Sobic005G005500 Sobic005G005500 Sobic001G543500--Sobic005G005500 Sobic002G314200 Sobic002G314200 Sobic001G543500--Sobic002G314200 Sobic002G088200--Sobic001G543500 Sobic002G088200--Sobic001G516800 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic006G118000 Sobic006G118000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic001G147400 Sobic001G147400 Sobic002G088200--Sobic001G147400 Sobic002G088200--Sobic010G208000 Sobic004G072000--Sobic010G208000 Sobic004G072000--Sobic004G034500 Sobic010G244600 Sobic010G244600 Sobic004G072000--Sobic010G244600 Sobic004G072000--Sobic008G139900 Sobic007G204400 Sobic007G204400 Sobic004G072000--Sobic007G204400 Sobic001G115800 Sobic001G115800 Sobic004G072000--Sobic001G115800 Sobic008G131200 Sobic008G131200 Sobic004G072000--Sobic008G131200 Sobic006G204000 Sobic006G204000 Sobic004G072000--Sobic006G204000 Sobic010G258700 Sobic010G258700 Sobic004G072000--Sobic010G258700 Sobic004G330400 Sobic004G330400 Sobic008G139900--Sobic004G330400 Sobic001G493800 Sobic001G493800 Sobic008G139900--Sobic001G493800 SobicK044200 SobicK044200 Sobic008G139900--SobicK044200 Sobic008G028500 Sobic008G028500 Sobic008G139900--Sobic008G028500 Sobic003G229150 Sobic003G229150 Sobic008G139900--Sobic003G229150 Sobic005G102100 Sobic005G102100 Sobic008G139900--Sobic005G102100 Sobic002G206200 Sobic002G206200 Sobic008G139900--Sobic002G206200 Sobic008G139900--Sobic006G204000 Sobic003G396900 Sobic003G396900 Sobic008G139900--Sobic003G396900 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic004G034500--Sobic001G543500 Sobic004G033900--Sobic002G088200 Sobic004G033900--Sobic004G034500 Sobic004G033900--Sobic001G543500 Sobic005G052000 Sobic005G052000 Sobic004G033900--Sobic005G052000 Sobic004G033900--Sobic001G516800 Sobic010G108500 Sobic010G108500 Sobic004G033900--Sobic010G108500 Sobic001G310800 Sobic001G310800 Sobic004G033900--Sobic001G310800 Sobic010G082800 Sobic010G082800 Sobic004G033900--Sobic010G082800 Sobic004G033900--Sobic006G118000 Sobic005G005500--Sobic008G139900 Sobic005G005500--Sobic004G072000 Sobic005G005500--Sobic006G204000 Sobic005G005500--Sobic003G229150 Sobic005G005500--Sobic004G330400 Sobic005G005500--Sobic010G244600 Sobic002G186600 Sobic002G186600 Sobic005G005500--Sobic002G186600 Sobic005G005500--Sobic005G102100 Sobic005G005500--Sobic001G543500 Sobic006G158700 Sobic006G158700 Sobic002G314200--Sobic006G158700 Sobic002G314200--Sobic001G543500 Sobic004G211600 Sobic004G211600 Sobic002G314200--Sobic004G211600 Sobic007G107700 Sobic007G107700 Sobic002G314200--Sobic007G107700 Sobic003G203000 Sobic003G203000 Sobic002G314200--Sobic003G203000 Sobic003G403900 Sobic003G403900 Sobic002G314200--Sobic003G403900 Sobic002G314200--Sobic002G088200 Sobic007G015500 Sobic007G015500 Sobic002G314200--Sobic007G015500 Sobic010G042400 Sobic010G042400 Sobic002G314200--Sobic010G042400
Octagon: transcription factors


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