Gene annotation
Transcriptome id Sobic.002G314200.1
Synonym Sb02g034360
Functional annotation ATP-dependent protease, putative, expressed
UniProt C5X9E3
Pfam PF02190
Panther DB PTHR23327 PTHR23327:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004176ATP-dependent peptidase activity


Orthologs (automatic annotation)
TAIR AT1G75460 : ATP-dependent protease La (LON) domain protein
RAP-DB (Rice) LOC_Os07g32560.1 : ATP-dependent protease, putative, expressed
MaizeGDB (Corn) Zm00025a048189 , Zm00025a014758
Brachypodium KQK16066
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G158700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
2 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
3 Sobic.004G211600 psaB translation factor, putative, expressed -
4 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
5 Sobic.003G203000 high light inducible protein, putative, expressed -
6 Sobic.003G403900 "domain confirmed by Pfam database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
7 Sobic.002G088200 expressed protein -
8 Sobic.007G015500 no apical meristem protein, putative, expressed -
9 Sobic.010G042400 -(PubMedID : 26465154)@expressed protein -
10 Sobic.003G230400 50S ribosomal protein L31, putative, expressed K02909: RP-L31, large subunit ribosomal protein L31
11 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
12 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
13 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
14 Sobic.004G040100 B-box (BBX) protein(PubMedID : 30626335)@CCT motif family protein, expressed -
15 Sobic.004G006400 cytochrome P450, putative, expressed -
16 Sobic.001G423400 RNA polymerase sigma factor, putative, expressed -
17 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
18 Sobic.003G336200 expressed protein -
19 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
20 Sobic.004G235700 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic002G314200 Sobic002G314200 Sobic006G158700 Sobic006G158700 Sobic002G314200--Sobic006G158700 Sobic001G543500 Sobic001G543500 Sobic002G314200--Sobic001G543500 Sobic004G211600 Sobic004G211600 Sobic002G314200--Sobic004G211600 Sobic007G107700 Sobic007G107700 Sobic002G314200--Sobic007G107700 Sobic003G203000 Sobic003G203000 Sobic002G314200--Sobic003G203000 Sobic003G403900 Sobic003G403900 Sobic002G314200--Sobic003G403900 Sobic002G088200 Sobic002G088200 Sobic002G314200--Sobic002G088200 Sobic007G015500 Sobic007G015500 Sobic002G314200--Sobic007G015500 Sobic010G042400 Sobic010G042400 Sobic002G314200--Sobic010G042400 Sobic009G062400 Sobic009G062400 Sobic006G158700--Sobic009G062400 Sobic009G237000 Sobic009G237000 Sobic006G158700--Sobic009G237000 Sobic009G207900 Sobic009G207900 Sobic006G158700--Sobic009G207900 Sobic004G154400 Sobic004G154400 Sobic006G158700--Sobic004G154400 Sobic006G097500 Sobic006G097500 Sobic006G158700--Sobic006G097500 Sobic006G158700--Sobic003G403900 Sobic001G180200 Sobic001G180200 Sobic006G158700--Sobic001G180200 Sobic003G328100 Sobic003G328100 Sobic006G158700--Sobic003G328100 Sobic007G135800 Sobic007G135800 Sobic006G158700--Sobic007G135800 Sobic001G543500--Sobic002G088200 Sobic004G072000 Sobic004G072000 Sobic001G543500--Sobic004G072000 Sobic008G139900 Sobic008G139900 Sobic001G543500--Sobic008G139900 Sobic001G516800 Sobic001G516800 Sobic001G543500--Sobic001G516800 Sobic010G208000 Sobic010G208000 Sobic001G543500--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic001G543500--Sobic004G034500 Sobic004G033900 Sobic004G033900 Sobic001G543500--Sobic004G033900 Sobic005G005500 Sobic005G005500 Sobic001G543500--Sobic005G005500 Sobic001G543500--Sobic002G314200 Sobic006G101500 Sobic006G101500 Sobic004G211600--Sobic006G101500 Sobic005G063000 Sobic005G063000 Sobic004G211600--Sobic005G063000 Sobic001G183000 Sobic001G183000 Sobic004G211600--Sobic001G183000 Sobic010G214100 Sobic010G214100 Sobic004G211600--Sobic010G214100 Sobic008G006100 Sobic008G006100 Sobic004G211600--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic004G211600--Sobic001G134700 Sobic004G211600--Sobic009G062400 Sobic004G298900 Sobic004G298900 Sobic004G211600--Sobic004G298900 Sobic003G160800 Sobic003G160800 Sobic004G211600--Sobic003G160800 Sobic007G107700--Sobic003G328100 Sobic003G070900 Sobic003G070900 Sobic007G107700--Sobic003G070900 Sobic007G107700--Sobic003G203000 Sobic009G170200 Sobic009G170200 Sobic007G107700--Sobic009G170200 Sobic005G028800 Sobic005G028800 Sobic007G107700--Sobic005G028800 Sobic001G118400 Sobic001G118400 Sobic007G107700--Sobic001G118400 Sobic007G107700--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic007G107700--Sobic010G231500 Sobic001G368600 Sobic001G368600 Sobic007G107700--Sobic001G368600 Sobic003G203000--Sobic007G107700 Sobic009G133700 Sobic009G133700 Sobic003G203000--Sobic009G133700 Sobic003G203000--Sobic007G135800 Sobic004G202200 Sobic004G202200 Sobic003G203000--Sobic004G202200 Sobic003G409700 Sobic003G409700 Sobic003G203000--Sobic003G409700 Sobic002G133900 Sobic002G133900 Sobic003G203000--Sobic002G133900 Sobic007G157300 Sobic007G157300 Sobic003G203000--Sobic007G157300 Sobic003G203000--Sobic006G158700 Sobic003G203000--Sobic009G237000 Sobic003G403900--Sobic006G158700 Sobic003G403900--Sobic009G133700 Sobic009G250400 Sobic009G250400 Sobic003G403900--Sobic009G250400 Sobic003G403900--Sobic007G157300 Sobic003G094100 Sobic003G094100 Sobic003G403900--Sobic003G094100 Sobic004G165700 Sobic004G165700 Sobic003G403900--Sobic004G165700 Sobic003G403900--Sobic001G180200 Sobic009G004100 Sobic009G004100 Sobic003G403900--Sobic009G004100 Sobic003G403900--Sobic007G135800 Sobic002G088200--Sobic001G543500 Sobic002G088200--Sobic001G516800 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic006G118000 Sobic006G118000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic001G147400 Sobic001G147400 Sobic002G088200--Sobic001G147400 Sobic002G088200--Sobic010G208000 Sobic001G286600 Sobic001G286600 Sobic007G015500--Sobic001G286600 Sobic001G423400 Sobic001G423400 Sobic007G015500--Sobic001G423400 Sobic002G136100 Sobic002G136100 Sobic007G015500--Sobic002G136100 Sobic009G219100 Sobic009G219100 Sobic007G015500--Sobic009G219100 Sobic007G015500--Sobic004G154400 Sobic007G015500--Sobic009G207900 Sobic002G258600 Sobic002G258600 Sobic007G015500--Sobic002G258600 Sobic007G015500--Sobic006G158700 Sobic007G015500--Sobic009G237000 Sobic003G230400 Sobic003G230400 Sobic010G042400--Sobic003G230400 Sobic006G238200 Sobic006G238200 Sobic010G042400--Sobic006G238200 Sobic003G419900 Sobic003G419900 Sobic010G042400--Sobic003G419900 Sobic003G398800 Sobic003G398800 Sobic010G042400--Sobic003G398800 Sobic002G370600 Sobic002G370600 Sobic010G042400--Sobic002G370600 Sobic003G408000 Sobic003G408000 Sobic010G042400--Sobic003G408000 Sobic003G431700 Sobic003G431700 Sobic010G042400--Sobic003G431700 Sobic004G308700 Sobic004G308700 Sobic010G042400--Sobic004G308700 Sobic003G367500 Sobic003G367500 Sobic010G042400--Sobic003G367500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.