Gene annotation
Transcriptome id Sobic.002G088200.1
Synonym Sb02g007280
Functional annotation expressed protein
UniProt C5X1Z0
Pfam PF11493
Panther DB PTHR36370 PTHR36370:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g13969.1 : expressed protein
MaizeGDB (Corn) Zm00025a013598
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G088200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
2 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
3 Sobic.004G033900 expressed protein -
4 Sobic.003G264700 expressed protein -
5 Sobic.002G256000 dehydrogenase, putative, expressed -
6 Sobic.006G118000 expressed protein -
7 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV
8 Sobic.001G147400 Ferredoxin(PubMedID : 26186930)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
10 Sobic.004G072000 ribosome, putative, expressed -
11 Sobic.010G244600 nifU, putative, expressed -
12 Sobic.004G204500 expressed protein -
13 Sobic.003G336200 expressed protein -
14 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
15 Sobic.008G139900 expressed protein -
16 Sobic.002G314200 ATP-dependent protease, putative, expressed -
17 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
18 Sobic.001G004500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
19 Sobic.003G309700 decarboxylase, putative, expressed K01592: tyrosine decarboxylase
20 Sobic.005G005500 macrophage migration inhibitory factor, putative, expressed -


Gene co-expression network
sample Sobic002G088200 Sobic002G088200 Sobic001G543500 Sobic001G543500 Sobic002G088200--Sobic001G543500 Sobic001G516800 Sobic001G516800 Sobic002G088200--Sobic001G516800 Sobic004G033900 Sobic004G033900 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic006G118000 Sobic006G118000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic001G147400 Sobic001G147400 Sobic002G088200--Sobic001G147400 Sobic010G208000 Sobic010G208000 Sobic002G088200--Sobic010G208000 Sobic001G543500--Sobic002G088200 Sobic004G072000 Sobic004G072000 Sobic001G543500--Sobic004G072000 Sobic008G139900 Sobic008G139900 Sobic001G543500--Sobic008G139900 Sobic001G543500--Sobic001G516800 Sobic001G543500--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic001G543500--Sobic004G034500 Sobic001G543500--Sobic004G033900 Sobic005G005500 Sobic005G005500 Sobic001G543500--Sobic005G005500 Sobic002G314200 Sobic002G314200 Sobic001G543500--Sobic002G314200 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic004G033900--Sobic002G088200 Sobic004G033900--Sobic004G034500 Sobic004G033900--Sobic001G543500 Sobic005G052000 Sobic005G052000 Sobic004G033900--Sobic005G052000 Sobic004G033900--Sobic001G516800 Sobic010G108500 Sobic010G108500 Sobic004G033900--Sobic010G108500 Sobic001G310800 Sobic001G310800 Sobic004G033900--Sobic001G310800 Sobic010G082800 Sobic010G082800 Sobic004G033900--Sobic010G082800 Sobic004G033900--Sobic006G118000 Sobic004G023400 Sobic004G023400 Sobic003G264700--Sobic004G023400 Sobic004G204500 Sobic004G204500 Sobic003G264700--Sobic004G204500 Sobic007G204400 Sobic007G204400 Sobic003G264700--Sobic007G204400 Sobic003G264700--Sobic002G088200 Sobic003G309700 Sobic003G309700 Sobic003G264700--Sobic003G309700 Sobic009G237800 Sobic009G237800 Sobic003G264700--Sobic009G237800 Sobic010G042400 Sobic010G042400 Sobic003G264700--Sobic010G042400 Sobic001G381900 Sobic001G381900 Sobic003G264700--Sobic001G381900 Sobic003G264700--Sobic001G543500 Sobic001G417200 Sobic001G417200 Sobic002G256000--Sobic001G417200 Sobic002G256000--Sobic010G082800 Sobic006G125000 Sobic006G125000 Sobic002G256000--Sobic006G125000 Sobic004G343100 Sobic004G343100 Sobic002G256000--Sobic004G343100 Sobic008G063100 Sobic008G063100 Sobic002G256000--Sobic008G063100 Sobic001G035800 Sobic001G035800 Sobic002G256000--Sobic001G035800 Sobic001G498300 Sobic001G498300 Sobic002G256000--Sobic001G498300 Sobic005G021600 Sobic005G021600 Sobic002G256000--Sobic005G021600 Sobic003G187000 Sobic003G187000 Sobic002G256000--Sobic003G187000 Sobic006G118000--Sobic008G139900 Sobic002G186600 Sobic002G186600 Sobic006G118000--Sobic002G186600 Sobic006G118000--Sobic004G072000 Sobic006G118000--Sobic010G108500 Sobic008G131200 Sobic008G131200 Sobic006G118000--Sobic008G131200 Sobic006G118000--Sobic010G208000 Sobic006G118000--Sobic001G516800 SobicK044200 SobicK044200 Sobic006G118000--SobicK044200 Sobic001G115800 Sobic001G115800 Sobic006G118000--Sobic001G115800 Sobic002G242000 Sobic002G242000 Sobic002G119500--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic002G119500--Sobic001G070500 Sobic004G056900 Sobic004G056900 Sobic002G119500--Sobic004G056900 Sobic009G130700 Sobic009G130700 Sobic002G119500--Sobic009G130700 Sobic002G033900 Sobic002G033900 Sobic002G119500--Sobic002G033900 Sobic001G364100 Sobic001G364100 Sobic002G119500--Sobic001G364100 Sobic001G078000 Sobic001G078000 Sobic002G119500--Sobic001G078000 Sobic001G046900 Sobic001G046900 Sobic002G119500--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G119500--Sobic002G329600 Sobic001G147400--Sobic001G516800 Sobic004G132400 Sobic004G132400 Sobic001G147400--Sobic004G132400 Sobic001G147400--Sobic002G283800 Sobic001G147400--Sobic010G208000 Sobic008G147101 Sobic008G147101 Sobic001G147400--Sobic008G147101 Sobic003G132300 Sobic003G132300 Sobic001G147400--Sobic003G132300 Sobic002G285450 Sobic002G285450 Sobic001G147400--Sobic002G285450 Sobic002G264800 Sobic002G264800 Sobic001G147400--Sobic002G264800 Sobic002G110800 Sobic002G110800 Sobic001G147400--Sobic002G110800 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.