Gene annotation
Transcriptome id Sobic.001G516800.2
Synonym CPSRP43, Sb01g048210, CAO
Functional annotation signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
UniProt A0A1Z5SBJ8
Pfam PF12796
Panther DB PTHR24128 PTHR24128:SF11
NCBI CDD -
KEGG Orthology K12271; SRP43, signal recognition particle 43 kDa protein
Gene Ontology GO:0009507; chloroplast GO:0009416response to light stimulus


Orthologs (automatic annotation)
TAIR AT2G47450 : chloroplast signal recognition particle component (CAO)
RAP-DB (Rice) LOC_Os03g03990.1 : signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23805
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
2 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
3 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
4 Sobic.001G147400 Ferredoxin(PubMedID : 26186930)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
5 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
6 Sobic.002G088200 expressed protein -
7 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
8 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
9 Sobic.009G179800 - -
10 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
11 Sobic.002G406400 PPR repeat domain containing protein, putative, expressed -
12 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
13 Sobic.002G285450 - -
14 Sobic.010G136900 white-brown complex homolog protein 11, putative, expressed -
15 Sobic.006G118000 expressed protein -
16 Sobic.004G033900 expressed protein -
17 Sobic.004G132400 lectin-like receptor kinase, putative, expressed -
18 Sobic.004G016700 expressed protein -
19 Sobic.004G072000 ribosome, putative, expressed -
20 Sobic.006G176100 expressed protein -


Gene co-expression network
sample Sobic001G516800 Sobic001G516800 Sobic010G208000 Sobic010G208000 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G147400 Sobic001G147400 Sobic001G516800--Sobic001G147400 Sobic004G034500 Sobic004G034500 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G543500 Sobic001G543500 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic004G072000 Sobic004G072000 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic008G131200 Sobic008G131200 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300 Sobic010G136900 Sobic010G136900 Sobic002G283800--Sobic010G136900 Sobic002G283800--Sobic001G516800 Sobic002G101800 Sobic002G101800 Sobic002G283800--Sobic002G101800 Sobic002G285450 Sobic002G285450 Sobic002G283800--Sobic002G285450 Sobic007G139000 Sobic007G139000 Sobic002G283800--Sobic007G139000 Sobic004G132400 Sobic004G132400 Sobic002G283800--Sobic004G132400 Sobic003G191800 Sobic003G191800 Sobic002G283800--Sobic003G191800 Sobic002G283800--Sobic001G147400 Sobic003G111600 Sobic003G111600 Sobic002G283800--Sobic003G111600 Sobic001G030200--Sobic010G208000 Sobic001G030200--Sobic002G019900 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic004G353900 Sobic004G353900 Sobic001G030200--Sobic004G353900 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic001G030200--Sobic004G072000 Sobic001G147400--Sobic001G516800 Sobic001G147400--Sobic004G132400 Sobic001G147400--Sobic002G283800 Sobic001G147400--Sobic010G208000 Sobic008G147101 Sobic008G147101 Sobic001G147400--Sobic008G147101 Sobic003G132300 Sobic003G132300 Sobic001G147400--Sobic003G132300 Sobic001G147400--Sobic002G285450 Sobic002G264800 Sobic002G264800 Sobic001G147400--Sobic002G264800 Sobic002G110800 Sobic002G110800 Sobic001G147400--Sobic002G110800 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic004G034500--Sobic001G543500 Sobic002G088200--Sobic001G543500 Sobic002G088200--Sobic001G516800 Sobic002G088200--Sobic004G033900 Sobic003G264700 Sobic003G264700 Sobic002G088200--Sobic003G264700 Sobic002G256000 Sobic002G256000 Sobic002G088200--Sobic002G256000 Sobic006G118000 Sobic006G118000 Sobic002G088200--Sobic006G118000 Sobic002G119500 Sobic002G119500 Sobic002G088200--Sobic002G119500 Sobic002G088200--Sobic001G147400 Sobic002G088200--Sobic010G208000 Sobic002G019900--Sobic001G030200 Sobic002G019900--Sobic002G285450 Sobic002G019900--Sobic010G208000 Sobic002G019900--Sobic001G516800 Sobic002G019900--Sobic007G139000 Sobic002G019900--Sobic003G111600 Sobic002G019900--Sobic004G016700 Sobic001G460700 Sobic001G460700 Sobic002G019900--Sobic001G460700 Sobic002G406400 Sobic002G406400 Sobic002G019900--Sobic002G406400 Sobic001G543500--Sobic002G088200 Sobic001G543500--Sobic004G072000 Sobic008G139900 Sobic008G139900 Sobic001G543500--Sobic008G139900 Sobic001G543500--Sobic001G516800 Sobic001G543500--Sobic010G208000 Sobic001G543500--Sobic004G034500 Sobic001G543500--Sobic004G033900 Sobic005G005500 Sobic005G005500 Sobic001G543500--Sobic005G005500 Sobic002G314200 Sobic002G314200 Sobic001G543500--Sobic002G314200 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic003G393800 Sobic003G393800 Sobic009G179800--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic001G411300 Sobic001G411300 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic005G128100 Sobic005G128100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300
Octagon: transcription factors


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